BOL

make a window of 60k of bed file. $ bedtools makewindows -g genome -w 60000 > 60K.windows.bed #bed #bin #window

I recommend two technologies: long reads to get the genome right, short reads to get the bases right. #Genome #Assembly #Reads #LonfReads

#CheckM provides a set of tools for #assessing the #quality of #genomes recovered from isolates, single cells, or #metagenomes. http://ecogenomics.github.io/CheckM/

Available bioconda packages https://bioconda.github.io/recipes.html #conda #bioconda

Long reads assembly tutorial https://www.melbournebioinformatics.org.au/tutorials/tutorials/pacbio/ #Long #Reads #PacBio #assembly #Genome

AB1 chromatograms used to validate the #ConTAMPR method for detecting DNA contamination https://data.mendeley.com/datasets/fsjpwrnv4t/1

#swirl #teaches you #R programming and data science interactively, at your own pace, and right in the R console! https://swirlstats.com/ #learn

Shiny tutorial http://shiny.rstudio.com/tutorial/ #R #Shiny

BOL wish a very happy new year 2019 #BOLovers #BOL #Wish #2019

Open source tools for videos making https://www.openshot.org/ #Open #Videos

CANU assembler FAQ https://canu.readthedocs.io/en/latest/faq.html #canu #faq #haploid #phase

#Block alignment: New representation and comparison #method to study #evolution of #genomes https://www.sciencedirect.com/science/article/pii/S0888754318304087

Mesquite: A modular system for evolutionary analysis http://www.mesquiteproject.org/ #Evolution #Framework

P-Values calculation https://www.mathbootcamps.com/what-is-a-p-value/ #P-Value #Pvalue

How to calculate P-Value https://www.wikihow.com/Calculate-P-Value #P-Value #Pvalue