BOL

Overlap Layout Consensus assembly http://www.cs.jhu.edu/~langmea/resources/lecture_notes/assembly_olc.pdf #OLC #Assembly

Comparison of the two major classes of #assembly algorithms: overlap–layout–consensus and de-bruijn-graph https://academic.oup.com/bfg/article/11/1/25/191455

De Bruijn graph Tutorial http://www.cs.jhu.edu/~langmea/resources/lecture_notes/assembly_dbg.pdf #Assembly #Tutorial #DeBruijn

#Assembly #Algorithms for #Next-Generation Sequencing Data https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2874646/

All about #newbler #assembly https://contig.wordpress.com/ #NGS

Meta-genomics assembly http://denbi-metagenomics-workshop.readthedocs.io/en/latest/index.html #Genomics #Meta #Assembly #Bacteria #Workshop #Tutorial

Genome assembly tutorial http://marinetics.org/teaching/hts/Assembly.html #assembly #Tutorial #MIRA #IonTorrent

https://github.com/institut-de-genomique/NaS #Assembly

Assembly comparison https://github.com/WGLab/uniline/tree/master/src/assembly_comparison #NGS #Assembly #MUMMer

Steps for #Prokaryotic #genome #assembly and #annotation http://www.edamamecourse.org/docs/metagenome_assembly_and_annotation.html

Understanding #Overlap Layout #Consensus #assembly http://www.cs.jhu.edu/~langmea/resources/lecture_notes/assembly_olc.pdf #OLC #Assembly

#Contiguous and #accurate de novo #assembly of #metazoan genomes with modest long read coverage https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkw654

Basics for assembly http://ged.msu.edu/angus/files/lecture4-mapping.pdf #Genome #Mapping #Assembly #PPT

Python exercise: Genome assembly https://munch-lab.org/2013/11/29/exercise-genome-assembly/ #Python #Assembly #Problems #Assembly

Assembly and repeats https://www.coursera.org/learn/dna-sequencing/lecture/fKX4C/lecture-third-law-of-assembly-repeats-are-bad #Assembly #Repeats #Bad