3930 days ago
Tools to detect synteny blocks regions among multiple genomes
...mosomes (pseudomolecules), by draft sequence contigs, or by FPC physical maps (with BAC-end or marker seque...enomic analysis. It is designed for constructing and visualizing synteny maps between two or three species,...2601 days ago
BrainSpan Atlas of the Developing Human Brain
...as- web source for revealing transcriptional mechanisms involved in human brain development. Article: http://www.nbcnews.com/science/science-news/maps-unborn-human-brains-point-med...3672 days ago
3416 days ago
Evaluation of genome assembly software based on long reads
...imal genomes, enabling new insights into evolution and sequence diversity. They have also been applied to resequencing analyses, to create detailed maps of structural variations in m...1910 days ago
Genome Assembly Tools and Software - PART2 !!
...y in quality. LACHESIS – Genome Assembly with Contact Probability MapsLACHESIS is method that e...ling contigs and/or scaffolds to full chromosomes based on the karyotype maps of Brassicaceae species and w...2676 days ago
Awesome perl frameworks, libraries and software - PART 2
...s call numbers kingpong/perl-PDF-WebKit - Convert HTML to PDF using WebKit (wkhtmltopdf) kensanata/hex-mapping - Tools to work with hex maps for roleplaying games. Usuall...2485 days ago
Best book Titles for Learning Bionformatics
...ss Molecular Bioinformatics: Algorithms and Applications, Steffen Schulze-Kremer, 1995, Walter De Gruyter Introduction to Computational Biology - Maps, sequences and genomes, Micha...3908 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...oS One 6(5):e19379, 2011. Full Text Development of high-density genetic maps for barley and wheat using a...al., PLoS One 6(4):e19315, 2011. Full Text Genome evolution and meiotic maps by massively parallel DNA seq...3770 days ago
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Dr. Ken Buetow: IS & Personalized Medicine Lecture-Part 1
...age disequilibrium methods as genetic mapping tools. The laboratory also developed methods and pipelines to generate and apply genome-wide genetic maps. In early work with genome-w...3861 days ago
Pack a perl program with their dependencies on Ubuntu !
... of the University of... Jit@jit.aber Sequence Tube Maps: displays multiple genomic se...ces in the form of a tube mapBy Jit 5 days ago SequenceTubeMapsdisplaysmultiplegenomicsequenc...1502 days ago
pbalign: maps PacBio reads to reference sequences and saves alignments to a BAM file
pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. The output Compare HDF5 file will be compatible with Quiver if --forQuiver optio...Tags: pbalign, maps, PacBio, reads, reference, sequences, alignments, BAM, NGS
2163 days ago
Comment on "URMAP, an ultra-fast read mapper"
map command Maps unpaired reads to a reference genome. The reference genome is stored as a UFI file created by the make_ufi command. The original FASTA file for the re...1274 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...20170918_oly_pacbio_miniasm_reads.gfa > 20170918_oly_pacbio_miniasm_reads.fasta 4 Run minimap with default settings Using the default settings maps the FASTQ reads back to the c...2158 days ago