Results for "SV"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...ents. Sibelia will also be helpful for the evolutionary and genome rearrangement studies for multiple strains of microorganisms. GSV (http://cas-bioinfo.cas.unt.edu/gsv/homepage.php) Genome Synteny...2601 days ago
List of gene ontology software and tools
The Gene Ontology (GO) is a set of associations from biological phrases to specific genes that are either chosen by trained curators or generated automatically. GO is...3701 days ago
- +12 more Blogs
Bookmarks
- ...range across one or multiple samples -- for your own algorithms or for visualization; or interactively process entire cohorts to find transition/transversion ratios, allelic frequen...
3479 days ago
- Explore genetic variation interactively. Compare entire cohorts in seconds with SQL-like queries. Compute transition/transversion ratios, genome-wide association, allelic freque...
3417 days ago
- +62 more Bookmarks
Pages
Bio++ : C Language libraries for your biological need
...sProt,Algorithms for plotting trees, with support for vector formats like SVG, Fig or LaTeX-PGF.So get rel...kers.Statistics on synonymous and non synonymous sites for coding sequencesVarious 'Neutrality' statistics...3939 days ago
- I found several useful bioinformatics articles which exaplain, define and elaborate the bioinformatics in scientific way. Therefore, instead of writting it again...
3912 days ago
- +6 more Pages
Top-level pages
- ...ous about data mining though, you’ll need something more heavy weight. I use R, free, and with good data mining packages such as vegan and labdsv. For beginners R can be impen...
3937 days ago
Most Commonly used Awk by Bioinformatician
...print;l[$2]=1}' input.txt count different words (wc): awk '{for(i=1;i!=NF;++i)c[$i]++}END{for (x in c) print x,c[x]}' input.txt deal with simple CSV: awk -F, '{print $1,$2}' su...3904 days ago
- +19 more Top-level pages
Wire posts
News
Webinar: Wednesday 21 August 2013 at Noon EDT
...cloning and marker-assisted breeding. http://www.extension.org/pages/67926/upcoming-webinar:-selective-sequencing-through-combinatorial-pooling#.UggsVuHyPqU3911 days ago
Surrogate Variable Analysis (SVA)
The sva package contains functions for removi...roughput experiment. Specifically, the sva package contains functions f...deled, or latent sources of noise. The sva package can be used to remov...nductor.org/packages/release/bioc/html/sva.html3466 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
...ts with pipelines requirements. He/she will be hosted by a bioinformatics/informatics team (7 people) (http://moulon.inra.fr/index.php/fr/equipestransversales/atelier-de-bioinformat...3940 days ago
Bioinformatics SVIMS Project Assistant Walk IN
...nterview for recruitment of Project Assistant in SVIMS Bioinformatics centre unde...hrough Bioinformatics” on 25.09.2014 at 11 AM in SVIMS, Tirupati. The engagement...lification etc., before the interview committee, SVIMS University, Tirupati. 2...3506 days ago
- +6 more Opportunity posts
ResearchLabs posts
- ...tal data, which are processed, archived, integrated and represented as working models through bioinformatics and mathematics. Link : http://www-dsv.cea.fr/en/instituts/institut-...
3910 days ago
- ...we take have broad connections to a variety of data-intensive fields, within the emerging discipline of data science. Personal Genome Variation: SVs Human Genome Annotation: Pr...
3691 days ago
- +2 more ResearchLabs posts
Video
Sequence Viewer: Download Transcripts, Exons and Proteins
How to download FASTA sequence for certain gene features while in the NCBI's Sequence Viewer. Sequence Viewer homepage: www.ncbi.nlm.nih.gov/projects/sviewer/ Sequence Viewer playlist: https://www.youtube.com/playlist?list=PL76D7EE6A6A8AC1C33511 days ago
Bio-Scripts
Transpose the file coordinates and plot dendrogram in R
#Save this as tr.awk { for (i=1; i2608 days ago
Read a tab delimited file and search with perl
use strict; use warnings; use Data::Dumper; use Text::CSV; use IO::Handle; my $file = "/home/urbe/Tools/Alienomics_v0.1/Alienomics/output/intermediate_files/rRNA/refGene.megablast"; open my $fh, "[0]\n"; warn Dumper $row; # To see the structure }2516 days ago
- +30 more Bio-Scripts
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...rokaryotic two-component systems. In this project, I will be in collaboration with Prof. Maria Kontoyianni, SIUE: Southern Illinois University Edwardsville, School of Pharmacy....2353 days ago
Tags
Software and Tools to detect structure variation with long reads !!
Uncovering the connection between genetics and heritable diseases requires an approach that looks at all the variant bases and types in a genome. While a PacBio de novo assembly resolves the most novel SV variants. 8-10X PacBio coverage of single genomes or trios reveals triple the SVs ...Tags: Bioinformatics, LR, Long, Reads, Tools, Software, Pacbio, Genome, DNA, Sequence, NGS, SV, Variation, Structure
2599 days ago
Comments
Comment on "Tools for RNA classification"
...provides a comprehensive resource for RNA classification. RNAcode: RNAcode is a machine learning-based tool that uses a support vector machine (SVM) algorithm to classify RNA s...412 days ago
Comment on "List of non-commercial NGS genotype-calling software"
Delly – Structural variant discovery by integrated paired-end and split-read analysis. [ paper-2012 ] lumpy – lumpy: a general probab...1134 days ago
- +16 more Comments
