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• • Poonam Mahapatra@poonam

  

  Poonam Mahapatra is now a friend with Jit 2619 days ago

  • Poonam Mahapatra@poonam

  

  • Jit@jit.aber

  
• • Jit@jit.aber

  

  Jit bookmarked MFannot : a program for the annotation of mitochondrial and plastid genomes 2619 days ago

  MFannot is a program for the annotation of mitochondrial and plastid genomes MFannot is a program for the annotation of mitochondrial and plastid genomes. It is a PERL wrapper around a set of diverse, external independent tools. It makes intense...

  https://github.com/BFL-lab/Mfannot
• • Jit@jit.aber

  

  Jit bookmarked Gepard: allows the calculation of dotplots even for large sequences like chromosomes or bacterial... 2619 days ago

  Gepard (German: "cheetah", Backronym for "GEnome PAir - Rapid Dotter") allows the calculation of dotplots even for large sequences like chromosomes or bacterial genomes. Reference: Krumsiek J, Arnold R, Rattei T. Gepard: A rapid and sensitive tool...

  https://github.com/univieCUBE/gepard
• • Jit@jit.aber

  

  Jit published a news post BLAST nr version 5 database, (nr_v5) 2622 days ago

  We have made changes the nr version 5 database, (nr_v5), to facilitate better search results and improved performance by reducing the number of redundant titles in the nr_v5 database used by webBLAST, which is also available for BLAST+ users.

  Comments

  • • biogeek@biogeek

    

    biogeek 2288 days ago

    Blast database version5 tutorial https://ftp.ncbi.nlm.nih.gov/blast/db/v5/blastdbv5.pdf
• • Jit@jit.aber

  

  Jit posted to the wire 2623 days ago

  Alignment-free sequence comparison: benefits, applications, and tools https://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1319-7 #Alignment #Sequence
• • Jit@jit.aber

  

  Jit posted to the wire 2623 days ago

  Software tools for visualizing Hi-C data https://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1161-y #HiC #3C
• • Jit@jit.aber

  

  Jit bookmarked TRITEX sequence assembly pipeline for Triticeae genomes 2625 days ago

  The pipeline is open-source and hosted in a public Bitbucket repository. TRITEX has been run on highly inbred genotypes of barley (Hordeum vulgare), tetraploid wheat (Triticum turgidum) and hexaploid wheat (T. aestivum) with reasonable...

  https://tritexassembly.bitbucket.io/
• • Jit@jit.aber

  

  Jit created a new bio-script Run sspace ! 2628 days ago
• • Jit@jit.aber

  

  Jit created a new bio-script Map the long reads 2631 days ago
• • Abhimanyu Singh@abhimanyu

  

  Abhimanyu Singh created a new bio-script Convert FASTQ to FASTQ 2631 days ago
• • Jit@jit.aber

  

  Jit bookmarked dnaPipeTE: a pipeline designed to find, annotate and quantify Transposable Elements 2633 days ago

  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs...

  https://github.com/clemgoub/dnaPipeTE
• • Jit@jit.aber

  

  Jit posted to the wire 2633 days ago

  Progressive alignment with Cactus: a multiple-genome aligner for the thousand-genome era https://www.biorxiv.org/content/biorxiv/early/2019/08/09/730531.full.pdf #Alignment #Cactus
• • Jit@jit.aber

  

  Jit bookmarked Cactus: a reference-free whole-genome multiple alignment program 2633 days ago

  Cactus is a reference-free whole-genome multiple alignment program. The principal algorithms are described here: https://doi.org/10.1101/gr.123356.111 Cactus uses substantial resources. For primate-sized genomes (3 gigabases each), you should...

  https://github.com/ComparativeGenomicsToolkit/cactus
• • BioStar@biostar

  

  BioStar published a news post JNU openings ! 2637 days ago

  Opening for Faculty positions (Assistant Professor, Associate Professor and Professor)
• • Abhimanyu Singh@abhimanyu

  

  Abhimanyu Singh bookmarked The Extensive de novo TE Annotator (EDTA) 2637 days ago

  The EDTA package was designed to filter out false discoveries in raw TE candidates and generate a high-quality non-redundant TE library for whole-genome TE annotations. Selection of initial search programs were based on benckmarkings on the...

  https://github.com/oushujun/EDTA
• • Rahul Agarwal@raag

  

  Rahul Agarwal posted a new ad in the ResearchLabs Prof. Dr. med. Andreas Ramming 2638 days ago
• • Rahul Agarwal@raag

  

  Rahul Agarwal posted a new ad in the Opportunity Data Scientist (m/w/d) 2638 days ago
• • Rahul Agarwal@raag

  

  Rahul Agarwal posted a new ad in the Opportunity Naturwissenschaftlicher Doktorand (m/w/d) phd student 2638 days ago
• • Rahul Agarwal@raag

  

  Rahul Agarwal posted a new ad in the Opportunity Post-Doc position in Immunology 2638 days ago
• • Jit@jit.aber

  

  Jit commented on the blog Important Journals, Blogs and Forums for Bioinformaticians 2639 days ago

  cell-systems journal also accept tools papers https://www.cell.com/cell-systems/home

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