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• • LEGE@lege

  

  LEGE posted to the wire 2483 days ago

  #Estimate the #insert #size with mapped reads $ head -10000 mappings.sam | awk '{ if ($9 > 0) { N+=1; S+=$9; S2+=$9*$9 }} END { M=S/N; print "n="N", mean="M", stdev="sqrt ((S2-M*M*N)/(N-1))}'
• • Neel@neelam

  

  Neel answered the question How to fix this? Can't locate getopts.pl in @INC (@INC contains: 2483 days ago

  You need to add this file https://bioinformaticsonline.com/file/view/36952/getoptspl-file at requested location. Cheers
• • BioStar@biostar

  

  BioStar asked How to fix this? Can't locate getopts.pl in @INC (@INC contains: 2483 days ago

  Cannot locate getopts.pl 
• • Rahul Nayak@rahul

  

  Rahul Nayak posted to the wire 2484 days ago

  Graph reference genome https://vimeo.com/184983995 #Graph #Reference #Genome #GraphRef
• • Neel@neelam

  

  Neel commented on the blog Computational Proteomics : Lets remember the basics 2485 days ago

  Interactive Periodic Table of the Elements, in Pictures and Words This periodic table is easy to remember https://elements.wlonk.com/ElementsTable.htm 
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked Seq: A high-performance, Pythonic language for bioinformatics 2485 days ago

    Seq is a programming language for computational genomics and bioinformatics. With a Python-compatible syntax and a host of domain-specific features and optimizations, Seq makes writing high-performance genomics software as easy as writing...

  https://seq-lang.org
• • Jit@jit.aber

  

  Jit posted to the wire 2486 days ago

  This works and I dont know how :) perl -pe '}{$_=$.' filename #Perl #Magic #PerlMagic
• • Rahul Nayak@rahul

  

  Rahul Nayak posted to the wire 2492 days ago

  https://www.frontiersin.org/articles/10.3389/fmicb.2018.00973/full #Recent #HGT
• • Neel@neelam

  

  Neel posted to the wire 2492 days ago

  Kill the screen $ screen -X -S [session # you want to kill] quit #Screen #Quit #Linux #Session #Remote
• • Neel@neelam

  

  Neel posted to the wire 2492 days ago

  #Rename the #fasta #header and #keep first $ perl -ne 'if (/^(>\S+)/){print "$1\n";}else{print $_;}' realTestDATA.fa > realTestDATA_headerCorrected.fa #Perl
• • Jit@jit.aber

  

  Jit bookmarked mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing 2494 days ago

  mosdepth can output: per-base depth about 2x as fast samtools depth--about 25 minutes of CPU time for a 30X genome.mean per-window depth given a window size--as would be used for CNV calling.the mean per-region given a BED file of regions.a...

  https://github.com/brentp/mosdepth
• • RASA Life Sciences@rasalsi

  

  RASA Life Sciences created a page Industrial Training in Computer Aided Drug Designing (CADD) 2495 days ago

  Learn More about  Computer Aided Drug Designing (CADD)!!! #rasalsi #rasa In our Industrial program you will get Knowledge on RNA Seq, CHIP Seq, Batch Starts From 18th November 2019 #hurryup #registernow #enquirenow The primary goal of the...
• • Rahul Nayak@rahul

  

  Rahul Nayak posted to the wire 2498 days ago

  R versus Python language https://data-flair.training/blogs/r-vs-python/ #R #Python
• • Neel@neelam

  

  Neel uploaded the file analyzing codon usage 2501 days ago

  perl script analyzing codon usage in an input sequence to evaluate how efficiently it will be expressed in Anopheles gambiae. The input codon usage table derived from highly‐expressed A. gambiae genes is appended below.
• • Jit@jit.aber

  

  Jit bookmarked Bioinformatics web development course 2502 days ago

  This web development course, targeted at Biology and Bioinformatics students, aims at teaching from scratch all the skills needed to setup a fully working Linux web server and to develop and deploy web applications for Bioinformatics. No previous...

  http://www.cellbiol.com/bioinformatics_web_development/introduction/
• • RASA Life Sciences@rasalsi

  

  RASA Life Sciences created a page Bioinformatics Services / CRO Services 2502 days ago

  RASA is set to provide premium technical and scientific services in a form of solutions, product development and training. .We are also very proficient in providing the high quality Research & Development services in life science informatics...
• • RASA Life Sciences@rasalsi

  

  RASA Life Sciences created a page Bioinformatics Training Courses At RASA LSI 2502 days ago

  RASA conducts comprehensive Life Science skill development training courses in Pune, India for working professionals, researchers, students and job-seeker. The trainings are crafted meticulously, covering different modules of courses such as...
• • Jit@jit.aber

  

  Jit bookmarked Dash: a web application framework that provides pure Python abstraction around HTML, CSS, and... 2503 days ago

  Dash is a web application framework that provides pure Python abstraction around HTML, CSS, and JavaScript. Dash Bio is a suite of bioinformatics components that make it simpler to analyze and visualize bioinformatics data and interact with them in...

  https://dash.plot.ly/dash-bio
• • Jit@jit.aber

  

  Jit bookmarked Shouji: a fast and efficient pre-alignment filter for sequence alignment 2504 days ago

  The ability to generate massive amounts of sequencing data continues to overwhelm the processing capacity of existing algorithms and compute infrastructures. In this work, we explore the use of hardware/software co-design and hardware acceleration...

  https://github.com/CMU-SAFARI/Shouji
• • BioStar@biostar

  

  BioStar bookmarked Gooey: Turn (almost) any Python command line program into a full GUI application with one line 2507 days ago

  Turn (almost) any Python command line program into a full GUI application with one line The easiest way to install Gooey is via pip pip install Gooey Alternatively, you can install Gooey by cloning the project to your local directory git...

  https://github.com/chriskiehl/Gooey

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