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• • BioStar@biostar

  

  BioStar posted to the wire 1229 days ago

  Split kmer analysis https://www.biorxiv.org/content/10.1101/453142v1.full.pdf #Kmer
• • BioStar@biostar

  

  BioStar bookmarked Kmer: a suite of tools for DNA sequence analysis 1229 days ago

  More at https://help.rc.ufl.edu/doc/Kmer This also includes: A2Amapper: ATAC, Assembly to Assembly Comparision tool: Comparative mapping between two genome assemblies (same species), or between two different genomes (cross...

  https://help.rc.ufl.edu/doc/Kmer
• • BioStar@biostar

  

  BioStar commented on the blog Important Journals, Blogs and Forums for Bioinformaticians 1229 days ago

  Molecular informatics https://onlinelibrary.wiley.com/journal/18681751
• • BioStar@biostar

  

  BioStar bookmarked JumboDB: tool for de Bruijn graph construction 1229 days ago

  jumboDB tool for fast de Bruijn graph construction from long sequences (reads or genomes) with very low error rate. JumboDB is not a genome assembler by itself but rather a subroutine that translates a set of reads into compressed de Bruijn...

  https://github.com/AntonBankevich/jumboDB
• • BioStar@biostar

  

  BioStar posted a new ad in the Opportunity Bioinformatics Research Scientist @ Oklahoma State University (OSU) 1229 days ago
• • BioStar@biostar

  

  BioStar published a blog post Bioinformatics tools for telomere to telomere assembly ! 1229 days ago

  optimize HiFi reads
• • BioStar@biostar

  

  BioStar posted to the wire 1230 days ago

  Enrichment analysis learning https://www.youtube.com/watch?v=2NC1QOXmc5o #Enrichment #Analysis #Learn
• • Shruti Paniwala@shruti

  

  Shruti Paniwala posted a new ad in the Opportunity Senior Scientist bioinformatics @ Eurofins Genomics India Pvt Ltd, Bengaluru. 1232 days ago
• • Neel@neelam

  

  Neel bookmarked QuasR: Quantification and annotation of short reads in R 1233 days ago

  The QuasR package (short for Quantify and annotate short reads in R) integrates the functionality of several R packages (such as IRanges (Lawrence et al. 2013) and Rsamtools) and external software (e.g. bowtie, through the Rbowtie package, and...

  https://www.bioconductor.org/packages/devel/bioc/vignettes/QuasR/inst/doc/QuasR.html
• • Neel@neelam

  

  Neel created a new bio-script Perl onliner to print fasta headers ! 1233 days ago
• • Neel@neelam

  

  Neel created a new bio-script Commandline to Extract a list of specific read IDs from a bam file 1233 days ago
• • Jit@jit.aber

  

  Jit created a new bio-script Bam to Fastq convert ! 1233 days ago
• • Jit@jit.aber

  

  Jit answered the question How to resolve samtools index error "Chromosome blocks not continuous" ? 1234 days ago

  It generally occur when you sort with -n flag (-samtools sort n /Sort by read name). Try sorting without -n flag and then index it.
• • LEGE@lege

  

  LEGE asked How to resolve samtools index error "Chromosome blocks not continuous" ? 1234 days ago

  samtools index mappedPairs.sorted.bam return the following error ... [bam_sort_core] merging from 0 files and 2 in-memory blocks...[E::hts_idx_push] Chromosome blocks not continuoussamtools index: failed to create index for "mappedPairs.sorted.bam"
• • Jit@jit.aber

  

  Jit bookmarked Interactive Bioinformatics Resources ! 1235 days ago

  Learn how to use bioinformatics tools right from your browser.Everything runs in a sandbox, so you can experiment all you want. More at sandbox.bio

  http://sandbox.bio
• • BioStar@biostar

  

  BioStar posted to the wire 1237 days ago

  Ten simple #rules for #teaching applied programming in an authentic and immersive #online environment https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009184
• • Surabhi Chaudhary@surabhi

  

  Surabhi Chaudhary posted to the wire 1237 days ago

  Python for Biologist https://pythonforbiologists.com/ #Book #Learn #Python
• • Jitendra Narayan@admin

  

  Jitendra Narayan is now a friend with Ajay Patil 1241 days ago

  • Jitendra Narayan@admin

  

  • Ajay Patil@secret1

  
• • Ajay Patil@secret1

  

  Ajay Patil is now a friend with Jitendra Narayan 1241 days ago

  • Ajay Patil@secret1

  

  • Jitendra Narayan@admin

  
• • Jit@jit.aber

  

  Jit commented on the blog Important Journals, Blogs and Forums for Bioinformaticians 1241 days ago

  APC free journals https://www.who.int/publications/journals/bulletin

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