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• • Jit@jit.aber

  

  Jit created a new bio-script Install ragout with conda ! 1349 days ago
• • Rahul Nayak@rahul

  

  Rahul Nayak asked How to fiv "Error in library(reshape) : there is no package called ‘reshape’" 1349 days ago

  [main] Real time: 2.026 sec; CPU: 1.798 secPlotting the coverageError in library(reshape) : there is no package called ‘reshape’Execution halted./setu.sh -k yes -m pe -t 1 -r SRR11140750_1.fastq.gz,SRR11140750_2.fastq.gz 11,91s user...
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked AlignGraph2: similar genome-assisted reassembly pipeline for PacBio long reads 1349 days ago

  AlignGraph2 is the second version of AlignGraph for PacBio long reads. It extends and refines contigs assembled from the long reads with a published genome similar to the sequencing genome. More...

  https://github.com/huangs001/AlignGraph2
• • Neel@neelam

  

  Neel created a new bio-script Install htop in elementary/Ubuntu OS ! 1353 days ago
• • Jit@jit.aber

  

  Jit bookmarked CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes 1353 days ago

  The pipeline can use information from scaffolded assemblies (for example from HiC or 10X Genomics), or even from diverged (~65-100 Mya) reference genomes for ordering the contigs and thus support the assembly process. This typically results in...

  https://github.com/HMPNK/CSA2.6
• • Rahul Nayak@rahul

  

  Rahul Nayak published a blog post Ancient whole genome duplication (WGD) detection tools ! 1356 days ago

  There are two methods for ancient WGD detection, one is collinearity analysis, and the other is based on the Ks distribution map. Among them, Ks is defined as the average number of synonymous substitutions at each synonymous site, and there is...
• • Jit@jit.aber

  

  Jit posted to the wire 1356 days ago

  https://training.galaxyproject.org/training-material/topics/visualisation/tutorials/circos/tutorial.html Visualization with circos #R #Circos #Steps #Method #Tutorial
• • Jit@jit.aber

  

  Jit created a new bio-script Perl script to check modules installed ! 1357 days ago
• • Jit@jit.aber

  

  Jit created a new bio-script Write bash in perl script ! 1359 days ago
• • Jit@jit.aber

  

  Jit created a new bio-script Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases ! 1361 days ago
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked Flanker 1363 days ago

  Flanker, a Python package which performs alignment-free clustering of gene flanking sequences in a consistent format, allowing investigation of mobile genetic elements (MGEs) without prior knowledge of their structure. Flanker can be...

  https://github.com/wtmatlock/flanker
• • Neel@neelam

  

  Neel published a blog post Run bash script in Perl program ! 1364 days ago

  Perl provides various features and operators for the execution of external commands (described as follows), which are unique in their own way. They vary slightly from one another, making it difficult for Perl beginners to choose between them.
• • Neel@neelam

  

  Neel created a new bio-script Perl script to run awk inside perl 1364 days ago
• • Neel@neelam

  

  Neel created a new bio-script Perl IPC::Open2 module 1364 days ago
• • Neel@neelam

  

  Neel bookmarked FiNGS: Filters for Next Generation Sequencing 1364 days ago

  Key features Filters SNVs from any variant caller to remove false positives Calculates metrics based on BAM files and provides filtering not possible with other tools Fully user-configurable filtering (including which filters to use and their...

  https://github.com/cpwardell/FiNGS
• • Shruti Paniwala@shruti

  

  Shruti Paniwala posted to the wire 1366 days ago

  Computational Genomics with R http://compgenomr.github.io/book/ #R #Computational #Genomics #Book #Tutorial
• • LEGE@lege

  

  LEGE created a new bio-script Perl script to get all the descendent in a tree ! 1368 days ago
• • LEGE@lege

  

  LEGE posted a new ad in the Opportunity Lecturer in Evolutionary Biology (Bioinformatics) at DEPARTMENT of ZOOLOGY | TE TARI MĀTAI KARAREHE... 1368 days ago
• • Neel@neelam

  

  Neel posted to the wire 1369 days ago

  Bioinformatics courses for African countries https://www.uom.ac.mu/index.php/ngs-bioinformatics-course #Africa #Courses #NGS #Network
• • Neel@neelam

  

  Neel posted a new ad in the ResearchLabs Katherine Belov Lab 1369 days ago

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