BOL: All Site Activity

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- Surabhi Chaudhary@surabhi
Surabhi Chaudhary bookmarked Phytozome v12.1: plant science community hub for accessing palnts genomic data 1712 days ago

Phytozome, the Plant Comparative Genomics portal of the Department of Energy's Joint Genome Institute, provides JGI users and the broader plant science community a hub for accessing, visualizing and analyzing JGI-sequenced plant genomes, as well as...

https://phytozome.jgi.doe.gov/pz/portal.html
- Jit@jit.aber
Jit commented on a bookmark collinearity: scripts to parse and analyse MCScanX collinearity output 1712 days ago

This python script is by far the best for MCscan https://github.com/tanghaibao/jcvi/wiki/MCscan-(Python-version)
- Neel@neelam
Neel commented on the blog Important Journals, Blogs and Forums for Bioinformaticians 1712 days ago

Bioinformatics tools and packages is also accepted in G3 journal https://www.g3journal.org/content/software-and-data-resources-0
- Jit@jit.aber
Jit bookmarked JCVI:Python utility libraries on genome assembly, annotation and comparative genomics 1712 days ago

Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics. https://github.com/tanghaibao/jcvi More at https://github.com/tanghaibao/jcvi/wiki

https://github.com/tanghaibao/jcvi
- Neel@neelam
Neel published a blog post Coronavirus COVID ‐19 Testing Sites In India 1713 days ago

Stay at home if you have coronavirus symptoms
- BioStar@biostar
BioStar bookmarked Apollo: A Sequencing-Technology-Independent, Scalable, and Accurate Assembly Polishing Algorithm 1713 days ago

Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a single run and polish the assemblies of genomes of any size. Described by Firtina et al. (preliminary version...

https://github.com/CMU-SAFARI/Apollo
- Jit@jit.aber
Jit created a new bio-script Commands to install Statistics::R module in Ubuntu ! 1713 days ago
- Jit@jit.aber
Jit commented on a page titled Installing Bio::SCF perl module 1713 days ago

In Ubuntu, you can try the following command to install perl packages: sudo apt-get install libbio-scf-perlsudo apt-get install -y bioperlsudo apt-get install -y libstatistics-distributions-perlsudo apt-get install -y libterm-progressbar-simple-perl
- Jit@jit.aber
Jit commented on a page titled Installing Bio::SCF perl module 1713 days ago

The module is updated https://launchpad.net/ubuntu/+source/libbio-scf-perl You can install it in Ubuntu as follows: sudo apt-get install libbio-scf-perl Dont forgot to install all deps first.
- Jit@jit.aber
Jit created a new bio-script Commands to install conda in Ubuntu ! 1713 days ago
- Jit@jit.aber
Jit created a new bio-script Pack a perl program with their dependencies on Ubuntu ! 1713 days ago
- Jit@jit.aber
Jit posted to the wire 1713 days ago

PAR::Packer to pack your perl program $ sudo apt install libpar-packer-perl #Perl #Pack #PAR
- Neel@neelam
Neel bookmarked GSP4PDB: a web tool to visualize, search and explore protein-ligand structural patterns 1714 days ago

GSP4PDB is a user-friendly and efficient application to search and discover new patterns of protein-ligand interaction. GSP4PDB is part of the services provided by the Bioinformatic Group of the University of...

http://gdblab.com/gsp4pdb/gsp4pdb2/
- Jit@jit.aber
Jit created a new bio-script Perl script to reads and extract webpage contents ! 1715 days ago
- Jit@jit.aber
Jit created a new bio-script Installing docker for Bioinformatics on Ubuntu ! 1715 days ago
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 1716 days ago

http://www.translationsallianz.de/train-plattformen/train-projects/improvit/improvit-phd-positions/ #phd #bigdata #bioinfo
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 1716 days ago

https://phenomenal-h2020.eu/home/ #metabolomics #platform
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 1716 days ago

https://biocontainers.pro/#/ https://academic.oup.com/bioinformatics/article/33/16/2580/3096437 #bioinfo #tools #management
- Jit@jit.aber
Jit posted to the wire 1716 days ago

Keep perl in container https://www.ecliptik.com/Containerizing-a-Perl-Script/ #Docker #Container #Perl #Dependencies
- BioStar@biostar
BioStar created a new bio-script Uninstall a perl module ! 1716 days ago

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