BOL

File system of Parrot http://ccl.cse.nd.edu/software/parrot/

Check out this GAP-Seq: a method for identification of DNA palindromes https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-15-394

Try online interface to run your Raku programs  https://glot.io/new/perl6 A nice place to test and check the program on cloud

Juicebox is visualization software for Hi-C data. This distribution includes the source code for Juicebox, Juicer Tools, and Assembly Tools. Download Juicebox here, or use Juicebox on the web. Detailed documentation is...

Filtering raw genomic datasets is essential to avoid chimeric assemblies and to increase the validity of sequence-based biological inference. BlobToolKit extends the BlobTools1/Blobology2 approach to simplify interactive and reproducible...

(grep ^"#" in.gff; grep -v ^"#" in.gff | sort -k1,1 -k4,4n) | bgzip > sorted.gff.gz; tabix -p gff sorted.gff.gz; #GATK

BioContainers is a community-driven project that provides the infrastructure and basic guidelines to create, manage and distribute bioinformatics packages (e.g conda) and containers (e.g docker, singularity). BioContainers is based on the popular...

#SciPy 1.0: fundamental algorithms for scientific computing in #Python https://www.nature.com/articles/s41592-019-0686-2

Perl References https://gist.github.com/afair/2402068 #Perl #Reference #Array #Hash

A Review of Scalable Bioinformatics Pipelines by Bjørn Fjukstad & Lars Ailo Bongo https://link.springer.com/article/10.1007/s41019-017-0047-z

#Genome #Analysis #Toolkit #Variant Discovery in High-Throughput #Sequencing Data https://gatk.broadinstitute.org/hc/en-us #GATK

It groups containers that make up an application into logical units for easy management and discovery. Kubernetes builds upon 15 years of experience of running production workloads at Google, combined with best-of-breed ideas and practices from...

A collection of high quality Nextflow pipelines https://github.com/nf-core/

Nextflow enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the most common scripting languages. Its fluent DSL simplifies the implementation and the deployment of...

Bioinformatics walkin at IGIB https://www.igib.res.in/sites/default/files/25022020WALKIN.pdf #WalkIN #IGIB #Delhi

One of the most attractive and secure OS https://parrotlinux.org/ #Parrot #OS

Open source LaTex editing tools https://www.texstudio.org/ #LaTex #Edit #Free

Download ISO (ISO is a special file format that represents the content of a small storage device) dd (and its derivatives) is a command line tool integrated in every UNIX and UNIX-like system, and it can be used to write the ISO file into a block...