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The R package GA provides a collection of general purpose functions for optimization using genetic algorithms. The package includes a flexible set of tools for implementing genetic algorithms search in both the continuous and discrete...

Machine learning/Generic algorithms in R https://www.r-bloggers.com/feature-selection-using-genetic-algorithms-in-r/ #Genetic #Algorithms #R #Code #GA

The #p53 #pathway: positive and negative feedback loops https://www.nature.com/articles/1208615

ATM, ATR, and DNA-PK: The Trinity at the Heart of the #DNA #Damage Response https://www.sciencedirect.com/science/article/pii/S1097276517303544

GeNeCK (Gene Network Construction Kit) is a comprehensive online tool kit that integrate various statistical methods to construct gene networks based on gene expression data and optional hub gene information. It efficiently constructs gene...

Split a multi-FASTA file into individual FASTA files: awk '/^>/{s=++d".fa"} {print > s}' multi.fa #split #multifasta

Indian https://io9.gizmodo.com/this-prehistoric-pocket-deer-has-fewer-chromosomes-than-1705706404 #muntjac #chromosome #breakpoints

https://www.broadinstitute.org/mammals-models/29-mammals-project #29 #MAMMALS #PROJECT

Bioinformatics postdoc http://www.hfsp.org/funding/postdoctoral-fellowships

UPhO finds orthologs with and without inparalogs from input gene family trees. Refer to the Documentation.pdf for more detailed explanations on its usage, installation and dependencies. Type UPhO.py -h for help. The only input requierement for UPhO...

exFat format mount in Linux sudo apt-get install exfat-fuse exfat-utils #exFat #Linux #Mount

LTR_retriever is a command line program (in Perl) for accurate identification of LTR retrotransposons (LTR-RTs) from outputs of LTRharvest, LTR_FINDER, and/or MGEScan-LTR and generating non-redundant LTR-RT library for genome annotations. By...

LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences. The Program first constructs all exact match pairs by a suffix-array based algorithm and extends them to long highly similar pairs. Then...

A brand-new web server, gVolante, which provides an online tool for (i) on-demand completeness assessment of sequence sets by means of the previously developed pipelines CEGMA and BUSCO and (ii) browsing pre-computed completeness scores for publicly...

This is a pipeline for finding motifs in fasta files.It can be run from the command line as follows: usage: orange_pipeline_refine.py [-h] [-w W] [--nmotifs NMOTIFS] [--iter ITER] [-c C][-s S] [-d] [-ff] [-v V]positive_seq negative_seq positional...

Updated ranking of institutes and countries based on developed biological databases

The GO knowledgebase is composed of two primary components: the Gene Ontology (GO), which provides the logical structure of the biological functions (‘terms’) and their relationships to one another, manifested as a directed...

gene_info recalculated daily--------------------------------------------------------------------------- tab-delimited one line per GeneID Column header line is the first line in the file. Note: subsets of gene_info are available in the...

Recommendations for the description of #sequence #variants https://www.hgvs.org/mutnomen/recs.html