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The Wire
#split
Wire posts tagged with 'split'
Neelam Jha
@neelam
Thread
By
Neelam Jha
1616 days ago
Multifasta 2 singlefasta cat toy.fasta| awk '{ if (substr($0, 1, 1)==">" {filename=(substr($0,2) ".fa")} print $0 > filename }'
#Split
#fasta
#multifasta
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
1930 days ago
Split a multi-FASTA file into individual FASTA files: awk '/^>/{s=++d".fa"} {print > s}' multi.fa
#split
#multifasta
Jit
@jit.aber
Thread
By
Jit
1958 days ago
#Split
the
#BAM
file $ /home/urbe/Tools/bamtools/bin/bamtools split -in improved3.fasta.sorted.bam -reference
#bamtools
BioStar
@biostar
Thread
By
BioStar
2041 days ago
Split the fasta $ pyfasta split -k 100 -o 20 input.fasta -n 1
#split
#pyfasta
#overlaps
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2211 days ago
#Split
#multifasta
$ cat hg18.fa | awk '{ if (substr($0, 1, 1)==">") {filename=(substr($0,2) ".fa")} print $0 > filename }'
Jit
@jit.aber
Thread
By
Jit
2489 days ago
Split the file in Linux with size. $ split --bytes=50M aaaa.fa
#split
#linux
#size
Jit
@jit.aber
Thread
By
Jit
2616 days ago
Split the bam file by chromosome. $ bamtools split -in file.bam -reference
#Split
#Bam
#Bamtools
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
2741 days ago
Slice on the fly with perl: my ($username, $real_name) = (split /:/, $str)[0, 4];
#Perl
#PerlTrick
#Split
Jit
@jit.aber
Thread
By
Jit
2774 days ago
Split the text file with line number in Linux: wc -l abc.txt and then: split -l 60000 abc.txt
#Split
#Break
#Line
#Ubuntu
#Linux
#Tricks