BOL: All Site Activity

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- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 2114 days ago

https://cran.r-project.org/web/packages/RGtk2/index.html #R #GUI
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 2114 days ago

https://rstudio.github.io/packrat/ #R #production
- Aaryan Lokwani@aaryan
Aaryan Lokwani is now a friend with Rahul Agarwal 2114 days ago
Aaryan Lokwani@aaryan
Rahul Agarwal@raag
- Rahul Agarwal@raag
Rahul Agarwal is now a friend with Aaryan Lokwani 2114 days ago
Rahul Agarwal@raag
Aaryan Lokwani@aaryan
- BioJoker@biojoker
BioJoker posted to the wire 2114 days ago

Diagram https://github.com/d3/d3/wiki/Gallery #Plot #Visualisation
- Jit@jit.aber
Jit posted to the wire 2116 days ago

Machine learning meets genome assembly https://academic.oup.com/bib/advance-article-abstract/doi/10.1093/bib/bby072/5074612 #genome #assembly #machine #learning
- BioStar@biostar
BioStar bookmarked BUSCA: an integrative web server to predict subcellular localization of proteins 2116 days ago

BUSCA (Bologna Unified Subcellular Component Annotator) is a web-server for predicting protein subcellular localization. BUSCA integrates different tools to predict localization-related protein features (DeepSig, TPpred3, PredGPI and ENSEMBLE3.0) as...

http://busca.biocomp.unibo.it/
- Jit@jit.aber
Jit posted to the wire 2118 days ago

samtools view -Sb pilonCor_round1.fasta.out.sam | samtools sort -m 4G -@ 40 -o pilonCor_round1.fasta.out.sorted.bam - && samtools index -@ 40 pilonCor_round1.fasta.out.sorted.bam #SAM2BAM
- BioJoker@biojoker
BioJoker posted to the wire 2119 days ago

set the path for python alias python="/usr/bin/python3.3" #python #path #set
- Jit@jit.aber
Jit posted to the wire 2119 days ago

samtools mpileup -uf reference.nt mapping.bam | bcftools call -c | vcfutils.pl vcf2fq > consensus.fasta #Genome #Assembly #Reference
- BioStar@biostar
BioStar bookmarked wtdbg2: A fuzzy Bruijn graph approach to long noisy reads assembly 2120 days ago

Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly...

https://github.com/ruanjue/wtdbg2
- Sanchari Sircar@Sanchari
Sanchari Sircar has a new avatar 2122 days ago
- Sanchari Sircar@Sanchari
Sanchari Sircar joined the group bioinfoirmatics study - research partner 2122 days ago
- Jitendra Narayan@admin
Jitendra Narayan is now a friend with Sanchari Sircar 2122 days ago
Jitendra Narayan@admin
Sanchari Sircar@Sanchari
- Sanchari Sircar@Sanchari
Sanchari Sircar is now a friend with Jitendra Narayan 2122 days ago
Sanchari Sircar@Sanchari
Jitendra Narayan@admin
- BioStar@biostar
BioStar uploaded the file Evaluation of genome assembly software based on long reads 2123 days ago

TGS technologies have been used to produce highly accurate de novo assemblies of hundreds of microbial genomes and highly contiguous reconstructions of many dozens of plant and animal genomes, enabling new insights into evolution and sequence...
- BioStar@biostar
BioStar posted to the wire 2123 days ago

The aim of this program suite is to support checks of #Sequence #Variant #Nomenclature according to the guidelines of the #Human #Genome #Variation Society. https://www.mutalyzer.nl/
- Jit@jit.aber
Jit posted to the wire 2123 days ago

Where is genomics going next? https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1626-2 #Next #Genomics #Future
- BioJoker@biojoker
BioJoker posted a new ad in the Opportunity Computer scientist/bioinformatician at IEO in Milan, Italy 2124 days ago
- Rahul Nayak@rahul
Rahul Nayak posted to the wire 2124 days ago

This script will #extract the intron feature #gff3 and sequence from gene_exon gff3 and fasta file. Extract-intron-from-gff3

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