BOL: All Site Activity

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- BioStar@biostar
BioStar bookmarked Reactome Pathway Database 2159 days ago

REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database. Our goal is to provide intuitive bioinformatics tools for the visualization, interpretation and analysis of pathway knowledge to support basic and clinical...

https://reactome.org/
- BioJoker@biojoker
BioJoker posted to the wire 2160 days ago

TIGER: tiled iterative genome assembler https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3526431/ #genome #assembly #tool
- BioStar@biostar
BioStar posted a new ad in the ResearchLabs Gupta Lab 2160 days ago
- BioStar@biostar
BioStar posted to the wire 2160 days ago

Ten quick tips for sharing open genomic data https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006472 #data #tips #genomics
- BioStar@biostar
BioStar posted a new ad in the Opportunity Assistant Professor at Sher-e- Kashmir University of Agricultural Sciences & Technology of... 2160 days ago
- BioStar@biostar
BioStar created a new bio-script Backward Elimination with Python 2162 days ago
- Jit@jit.aber
Jit bookmarked GeneOverlap: An R package to test and visualize gene overlaps 2162 days ago

Overlapping gene lists can reveal biological meanings and may lead to novel hypotheses. For example, histone modification is an important cellular mechanism that can pack and re-pack chromatin. By making the chromatin structure more dense or loose,...

https://bioconductor.org/packages/release/bioc/vignettes/GeneOverlap/inst/doc/GeneOverlap.pdf
- Jit@jit.aber
Jit commented on a page titled Perl one-liner for bioinformatician !!! in the group Perl *PIPERs 2162 days ago

This tutorial is useful https://blogs.oracle.com/linux/the-top-10-tricks-of-perl-one-liners-v2
- Jit@jit.aber
Jit bookmarked NanoPack: visualizing and processing long-read sequencing data 2164 days ago

The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with links to separate scripts and their documentation. The scripts are compatible...

https://github.com/wdecoster/nanopack
- Jit@jit.aber
Jit created a new bio-script Split the multifasta in separate files ! 2164 days ago
- Neel@neelam
Neel commented on the blog Important Journals, Blogs and Forums for Bioinformaticians 2167 days ago

Cells accept bioinformatics papers https://www.mdpi.com/journal/cells/special_issues/bioinformatics_cells
- BioStar@biostar
BioStar commented on a page titled Bioinformatics Companies in India 2167 days ago

quantumzyme in india http://quantumzyme.com/
- Jit@jit.aber
Jit bookmarked Versatile genome assembly evaluation with QUAST-LG 2168 days ago

QUAST-LG is an extension of QUAST intended for evaluating large-scale genome assemblies (up to mammalian-size). QUAST-LG is included in the QUAST package starting from version 5.0.0 (download the latest release). Run QUAST as...

http://cab.spbu.ru/software/quast-lg/
- Jit@jit.aber
Jit posted to the wire 2168 days ago

Is It #Ordered Correctly? #Validating #Genome #Assemblies by Optical Mapping http://www.plantcell.org/content/30/1/7
- Rahul Nayak@rahul
Rahul Nayak commented on the file Assembly tutorial PPT 2169 days ago

Genome assembly tutorial https://astrobiomike.github.io/genomics/de_novo_assembly
- Neel@neelam
Neel commented on the blog Important Journals, Blogs and Forums for Bioinformaticians 2169 days ago

Nucleus journal accept bioinformatics tool and software papers https://www.springer.com/life+sciences/cell+biology/journal/13237
- Shruti Paniwala@shruti
Shruti Paniwala bookmarked Genome Annotation using MAKER tutorial ! 2169 days ago

MAKER is a great tool for annotating a reference genome using empirical and ab initiogene predictions. GMOD, the umbrella organization that includes MAKER, has some nice tutorials online for running MAKER. However, these were quite...

https://www.biostars.org/p/261203/
- Shruti Paniwala@shruti
Shruti Paniwala posted to the wire 2169 days ago

Gene prediction tools http://genome.crg.es/courses/laCaixa05/Prediction/index.html #Genes #Predicts
- Jit@jit.aber
Jit posted to the wire 2169 days ago

Export the PATH in Linux $ PATH="/home/urbe/Tools/ALLHiC/scripts:${PATH}" and then $ export PATH #Path #Set #Variable
- Rahul Nayak@rahul
Rahul Nayak posted to the wire 2169 days ago

Add number in fasta header $ awk '/^>/{$0=$0"_"(++i)}1' infile.fa #fasta #header #add #number #count

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