Here is the list of puzzles which are asked these days in the Interview
You can also refer GeeksforGeeks , it has lots of puzzles.
$ ./fastANI -h
$ ./fastANI -q [QUERY_GENOME] -r [REFERENCE_GENOME] -o [OUTPUT_FILE]
Here QUERY_GENOME and REFERENCE_GENOME are the query genome assemblies in fasta or multi-fasta format.
$ ./fastANI -q [QUERY_GENOME] --rl [REFERENCE_LIST] -o [OUTPUT_FILE]
For above use case, REFERENCE_LIST should be a file containing directory paths to reference genomes, one per line.
$ ./fastANI --ql [QUERY_LIST] --rl [REFERENCE_LIST] -o [OUTPUT_FILE]
Again, QUERY_LIST and REFERENCE_LIST are files containing paths to genomes, one per line.