BOL

The Open Bioinformatics Journal https://www.benthamopen.com/TOBIOIJ/ #Note impact factor ~4 ... ??? 

Bioinformatics jobs at CUJ, Jharkhand http://www.cuj.ac.in/downloads/advtbuilderDLS25oct2018.pdf #Job

I wrote a tools "Palindromer" to find palindromes in whole genome sequences. You can try https://github.com/jnarayan81/Palindromer . I am happy to improve it, if any features are requested. 

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4015356/

It is recommended to used genomes (N50 > 1Mb) for synteny analysis https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2026-4

Synima written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer, and outputs an overview of genome-wide synteny in PDF. Each of these programs are included...

VGSC, the Vector Graph toolkit of genome Synteny and Collinearity, and its online service, to visualize the synteny and collinearity in the common graphical format, including both raster (JPEG, Bitmap, and PNG) and vector graphic (SVG, EPS, and...

Visualize the chromosomes http://visualization.ritchielab.org/ #PhenoGram

R graphics https://bioconductor.org/packages/devel/bioc/vignettes/chromPlot/inst/doc/chromPlot.pdf #chromPlot

http://www.bioconductor.org/packages/release/bioc/vignettes/Gviz/inst/doc/Gviz.pdf #Plot #Chr

Bash scripting cheatsheet https://devhints.io/bash #Bash #CheatSheet #Script

This is how it work :)

http://www.jaduniv.edu.in/upload_files/scroll_info/1537868817.pdf Bioinformatics #Jobs

Allows automatic annotation of metazoan mitochondrial genomes. MITOS is a pipeline designed to compute a consistent de novo annotation of the mitogenomic sequences. The software allows for a systematic error screening, the standardisation of gene...

e94, we revolutionised the way we determine transcription factor binding sites, using a new data source from the SELEX project

I guess, your bam file is zipped. Try renaming your *.vcf file to *.vcf.gz and run it. Hopefully this will fix the error ... 

whatshap phase -o seeWhat.vcf --reference genome.fa see.vcf genome.fa.sorted.bam This is WhatsHap 0.17 running under Python 3.6.6Traceback (most recent call last): File "/home/anaconda3/bin/whatshap", line 11, in <module>...

Bioinformatics jobs at http://actrec.gov.in/data%20files/Vacancies/2018/ACTREC-Advt-74-2018.pdf #ACTREC #Job #Bioinformatics

Third generation sequencing (TGS) are highly promising technologies but the long and noisy reads from TGS are difficult to align using existing algorithms. Here, we present COSINE, a conceptually new method designed specifically for aligning long...