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https://github.com/Ensembl/ensembl-vep #Variant #Effect #Predictor #Github

Variant Effect Predictor http://www.ensembl.org/Tools/VEP #Variant #Effect #Predictor

P_RNA_scaffolder is a novel scaffolding tool using Pair-end RNA-seq to scaffold genome fragments. The method is suitable for most genomes. The program could utilize Illumina Paired-end RNA-sequencing reads from target speciesies. Our method provides...

Efficiency of #PacBio long read #correction by 2nd generation #Illumina sequencing https://www.sciencedirect.com/science/article/pii/S0888754317301660

Added Command line argument support. Multi-stage execution modes. Support for parallelization. Now execution proceeds in batches of long reads the size of which can be set by --long_read_batch_size N. Better compressed intermediate files. Added...

An error correction method that uses long reads only. The method consists of two phases: first, we use an iterative alignment-free correction method based on de Bruijn graphs with increasing length of k-mers, and second, the corrected reads are...

#Nigerian Society for #Bioinformatics and Computational Biology (#NISBCB) http://cubre.covenantuniversity.edu.ng/index.php/nigeria-society-for-bioinformatics-and-computatational-biology-nisbcb/#.W4_7m

The Genetics, Genomics & Bioinformatics Department (GBBD) at NABDA is unique, encompassing all facets of modern genetics and bioinformatics research. Trans-disciplinary research being conducted in our laboratories would lead to cures for human...

Bioinformatics in Nigeria http://bioinformatics.ui.edu.ng/ #Nigeria #Bioinformatics

Computational Biology and Bioinformatics in Nigeria https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3998874/ #Nigeria #Bioinformatics #Scope

Multi-line fasta to single line fasta $ perl -pe '/^>/ ? print "\n" : chomp' in.fasta | tail -n +2 > out.fasta #Multiline #Singleline #Fasta

If you have a later version than 2.6 you'll need to set 2.6 as the default Python.

Snakemake install Ubuntu $ sudo apt-get install snakemake #snakemake #Ubuntu #Install

Snakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from single-core workstations to compute clusters without modifying the workflow. 

You can also bioinformatics tools at https://www.journals.elsevier.com/information-and-software-technology/short-communications/information-and-software-technology-now-publishing-short-com