BOL: All Site Activity

All Site Activity

- LEGE@lege
LEGE created a new bio-script Install assembly-stat using conda ! 1255 days ago
- LEGE@lege
LEGE created a new bio-script install gap2seq using conda ! 1255 days ago
- LEGE@lege
LEGE created a new bio-script Install seqtk using conda ! 1255 days ago
- LEGE@lege
LEGE created a new bio-script Install Minimap2 using conda ! 1255 days ago
- LEGE@lege
LEGE created a new bio-script Install seqkit using conda ! 1255 days ago
- LEGE@lege
LEGE created a new bio-script Install CVSTK using codna ! 1255 days ago
- LEGE@lege
LEGE created a new bio-script Install Shasta using conda ! 1255 days ago
- LEGE@lege
LEGE created a new bio-script Install CANU with conda ! 1255 days ago
- Jit@jit.aber
Jit bookmarked JCVI utility libraries 1294 days ago

Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics.

https://github.com/tanghaibao/jcvi
- Jit@jit.aber
Jit bookmarked Simons Genome Diversity Project 1294 days ago

Complete genome sequences from more than one hundred diverse human populations All genomes in the dataset were sequenced to at least 30x coverage using Illumina technology. The sequencing reads were mapped and genotyped using a customized procedure...

https://www.simonsfoundation.org/simons-genome-diversity-project/
- Jit@jit.aber
Jit bookmarked HapSolo: An optimization approach for removing secondary haplotigs during diploid genome assembly... 1294 days ago

HapSolo, that identifies secondary contigs and defines a primary assembly based on multiple pairwise contig alignment metrics. HapSolo evaluates candidate primary assemblies using BUSCO scores and then distinguishes among candidate assemblies using...

https://github.com/esolares/HapSolo
- Jit@jit.aber
Jit bookmarked InfoGenomeR: Integrative reconstruction of cancer genome karyotypes 1297 days ago

InfoGenomeR is the Integrative Framework for Genome Reconstruction that uses a breakpoint graph to model the connectivity among genomic segments at the genome-wide scale. InfoGenomeR integrates cancer purity and ploidy, total CNAs, allele-specific...

https://github.com/dmcblab/InfoGenomeR
- Shruti Paniwala@shruti
Shruti Paniwala created a new bio-script R script to visualize fastANI core-genome comparison 1302 days ago
- Neel@neelam
Neel created a new bio-script Download genome using NCBI esearch command line ! 1302 days ago
- Neel@neelam
Neel created a new bio-script Install NCBI entrez-direct and esearch using conda ! 1302 days ago
- Neel@neelam
Neel commented on a bookmark FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI) 1302 days ago

Usage Summary Produce help page. Quickly check the software usage and available command line options. $ ./fastANI -h One to One. Compute ANI between single query and single reference genome: $ ./fastANI -q [QUERY_GENOME]...
- Neel@neelam
Neel bookmarked CoverM: Read coverage calculator for metagenomics 1302 days ago

CoverM aims to be a configurable, easy to use and fast DNA read coverage and relative abundance calculator focused on metagenomics applications. CoverM calculates coverage of genomes/MAGs coverm genome (help) or individual...

https://github.com/wwood/CoverM
- Shruti Paniwala@shruti
Shruti Paniwala posted a new ad in the Opportunity postdoctoral fellow for a large-scale microbial comparative genomics ! 1303 days ago
- Shruti Paniwala@shruti
Shruti Paniwala posted a new ad in the ResearchLabs Kanthida Lab ! 1304 days ago
- Shruti Paniwala@shruti
Shruti Paniwala bookmarked Bioinformatics in Thailand ! 1304 days ago

Our international PhD and master programs are designed for students who desire focused training in the elements of biology, computer science, and information technology needed for a successful career in the exciting new discipline of Bioinformatics...

https://bioinformatics.kmutt.ac.th/

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