BOL: All Site Activity

All Site Activity

- Jit@jit.aber
Jit bookmarked JUDI: Just Do It 1733 days ago

judi comes from the idea of bringing the power and efficiency of doit to execute any kind of task under many combinations of parameter settings. https://github.com/ncbi/JUDI

https://github.com/ncbi/JUDI
- LEGE@lege
LEGE created a new bio-script Tadpole is 250x faster than SPADes assembler ! 1737 days ago
- LEGE@lege
LEGE created a new bio-script Remove dupcates in multifasta file ! 1737 days ago
- LEGE@lege
LEGE posted to the wire 1737 days ago

Count number of fasta sequence $ awk '/^>/ { f = !a[$0]++ } f' aaaa.fa > bbbb.fa #count #fasta #oneliner
- LEGE@lege
LEGE posted to the wire 1737 days ago

Snakemake pipeline https://git.scicore.unibas.ch/zavolan_public/A-seq2-processing #A-Seq2 #Snakemake
- LEGE@lege
LEGE created a new bio-script Python script to read FASTA and FASTQ file ! 1737 days ago
- Jit@jit.aber
Jit posted to the wire 1738 days ago

#NLP-MeTaxa: A Natural Language Processing Approach for #Metagenomic #Taxonomic #Binning Based on Deep Learning https://github.com/padriba/NLP_MeTaxa/
- Jit@jit.aber
Jit posted a new ad in the Opportunity Nigerian Bioinformatics and Genomics Network (NBGN) 1739 days ago
- Neel@neelam
Neel created a new bio-script Print in terminal with python ! 1739 days ago
- Jit@jit.aber
Jit posted to the wire 1739 days ago

Understanding Covid variant https://sangerinstitute.blog/2021/06/29/covid-connections-variant-or-villain/ #Covid #Variant #Disease #SARS-Cov2
- Neel@neelam
Neel commented on the bio-script Estimate Genome Size with Jellyfish and R 1742 days ago

Jellyfish manual at http://www.genome.umd.edu/docs/JellyfishUserGuide.pdf
- Neel@neelam
Neel created a new bio-script Install Jellyfish on Linux ! 1742 days ago
- Jit@jit.aber
Jit posted to the wire 1742 days ago

#Ten simple #rules for organizing a #bioinformatics #training #course in low- and #middle-income countries https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009218
- Jit@jit.aber
Jit posted a new ad in the Opportunity Postdoc position at Kiel University, Germany 1742 days ago
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary created a new bio-script List of string comparison algorithms ! 1743 days ago
- Neel@neelam
Neel posted to the wire 1743 days ago

Bioinformatics summit at Delhi, India https://webs.iiitd.edu.in/hitsummit/ #Free #Summit #HIT #Health
- Neel@neelam
Neel bookmarked biostarhandbook 1743 days ago

Nice book collection for bioinformatician ... highly recommended.

https://www.biostarhandbook.com/
- Neel@neelam
Neel bookmarked Applying MinHash to cluster RNAseq samples 1744 days ago

A kmer blog worth spending time on

http://ivory.idyll.org/blog/2016-sourmash.html
- Neel@neelam
Neel bookmarked k-mers tutorial - classification and taxonomy 1744 days ago

DNA k-mers underlie much of our assembly work, and we (along with many others!) have spent a lot of time thinking about how to store k-mer graphs efficiently, discard redundant data, and count them efficiently. More recently, we've...

http://ivory.idyll.org/blog/2017-something-about-kmers.html
- Neel@neelam
Neel posted to the wire 1744 days ago

#RepExpress: A Novel #Pipeline for the Quantification and Characterization of #Transposable #Element #Expression from RNA-seq Data https://pubmed.ncbi.nlm.nih.gov/34387946/

BOL

Our Sponsors

All Site Activity