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- Jit@jit.aber
Jit bookmarked Modular, efficient and constant-memory single-cell RNA-seq preprocessing 1797 days ago

With kallisto | bustools you can Generate a cell x gene or cell x transcript equivalence class count matrix Perform RNA velocity and single-nuclei RNA-seq analsis Quantify data from numerous technologies such as...

https://pachterlab.github.io/kallistobustools/
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- Neel@neelam
  
  Neel 1797 days ago
  scRNA-seq_intro
  https://pachterlab.github.io/kallistobustools/tutorials/scRNA-seq_intro/python/scRNA-seq_intro/
- Neel@neelam
Neel bookmarked A simple tutorial for a complex ComplexHeatmap 1800 days ago

ComplexHeatmap (Gu, Eils, and Schlesner (2016)) is an R Programming Language (R Core Team (2020)) package that is currently listed in the Bioconductor package repository. install and load required packages...

https://github.com/kevinblighe/E-MTAB-6141
- LEGE@lege
LEGE is now a friend with Ravindra Raut 1803 days ago
LEGE@lege
Ravindra Raut@Ravi
- Ravindra Raut@Ravi
Ravindra Raut is now a friend with LEGE 1803 days ago
Ravindra Raut@Ravi
LEGE@lege
- Shruti Paniwala@shruti
Shruti Paniwala is now a friend with Ravindra Raut 1803 days ago
Shruti Paniwala@shruti
Ravindra Raut@Ravi
- Ravindra Raut@Ravi
Ravindra Raut is now a friend with Shruti Paniwala 1803 days ago
Ravindra Raut@Ravi
Shruti Paniwala@shruti
- Rahul Nayak@rahul
Rahul Nayak bookmarked DEG 5.0: a database of essential genes in both prokaryotes and eukaryotes 1803 days ago

Essential genes are those indispensable for the survival of an organism, and their functions are therefore considered a foundation of life. Determination of a minimal gene set needed to sustain a life form, a fundamental question in biology, plays a...

http://www.essentialgene.org/
- Rahul Nayak@rahul
Rahul Nayak bookmarked DEG 5.0: a database of essential genes in both prokaryotes and eukaryotes 1803 days ago

Essential genes are those indispensable for the survival of an organism, and their functions are therefore considered a foundation of life. Determination of a minimal gene set needed to sustain a life form, a fundamental question in biology, plays a...

http://www.essentialgene.org/
- Rahul Nayak@rahul
Rahul Nayak published a blog post List of useful machine / ai learning resources ! 1803 days ago

Learning resources !
- Neel@neelam
Neel posted to the wire 1807 days ago

GitHub Grants for Open Source https://github.com/github/india/blob/main/Open%20Source/GRANTS.md #Github #Grants #Open #Source
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary posted a new ad in the ResearchLabs Gamper Lab 1807 days ago
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary created a new bio-script Python script to download covid genome ! 1807 days ago
- Neel@neelam
Neel posted to the wire 1809 days ago

Bioinformatics tutorial and books at https://rsh249.github.io/bioinformatics/ #Books #Tutorial #Learn
- LEGE@lege
LEGE asked GLIBC_2.23' not found error with alienomics ! 1810 days ago

(base) lege@Bathymodiolus:~$ ./alienomics_v0.3.1Can't load '/tmp/par-6a6974656e647261/cache-f3e57c2becbb7e00629c1273cf03dd05ad45721b/5b8c5ac2.so' for module POSIX: /lib/x86_64-linux-gnu/libm.so.6: version `GLIBC_2.23' not found (required by...
- Jit@jit.aber
Jit posted to the wire 1810 days ago

Multi fasta to single fasta files $ perl -ne 'if (/^>(\S+)/) { close OUT; open OUT, ">$1.fasta" } print OUT' genome.fasta #Multi-fasta #fasta #multi #genome #files
- Jit@jit.aber
Jit posted to the wire 1810 days ago

install PAR::Packer in unbuntu. $ sudo apt-get install libpar-packer-perl #pp #Perl #Ubuntu
- Jit@jit.aber
Jit bookmarked Public Databases for Bioinformatics ! 1810 days ago

https://www.nature.com/articles/s41467-020-17155-yServer Infrastructure: File Server: dhara: Synology 3614 Storage Appliance 4 Core Xeon 108TB disk storage 10Gb ethernet to SCG3 Access atx: dhara:5000 Has btsync server (try it - its much...

http://mitra.stanford.edu/
- Jit@jit.aber
Jit bookmarked Janggu - Deep learning for Genomics 1810 days ago

Janggu is a python package that facilitates deep learning in the context of genomics. The package is freely available under a GPL-3.0 license. Detail tutorial at https://janggu.readthedocs.io/en/latest/ USE...

https://github.com/BIMSBbioinfo/janggu
- Ravindra Raut@Ravi
Ravindra Raut has a new avatar 1811 days ago
- Jitendra Narayan@admin
Jitendra Narayan is now a friend with Ravindra Raut 1811 days ago
Jitendra Narayan@admin
Ravindra Raut@Ravi

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