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Neel created a new bio-script Perl onliner to print fasta headers !- Neel created a new bio-script Commandline to Extract a list of specific read IDs from a bam file
- Jit created a new bio-script Bam to Fastq convert !
- Jit answered the question How to resolve samtools index error "Chromosome blocks not continuous" ?
- Jit bookmarked Interactive Bioinformatics Resources !
- Surabhi Chaudhary posted to the wire
- Jitendra Narayan is now a friend with Ajay Patil
- Ajay Patil is now a friend with Jitendra Narayan
- Jit commented on the blog Important Journals, Blogs and Forums for Bioinformaticians
- Jitendra Narayan posted a new ad in the Opportunity Project Associate-I | Project Associate-II | Senior Project Associate @ IGIB
- Shruti Paniwala commented on a bookmark List of Bioinformatics Vacancy, Jobs, Opportunity websites
- Surabhi Chaudhary commented on a bookmark Coronavirus Resources !
- Neel commented on a bookmark Calling variants in non-diploid systems
- Neel bookmarked Calling variants in non-diploid systemsComments
- Neel 1245 days ago
FreeBayes is widely used for calling variants in diploid systems. However, it can also be used for calling variants in pooled samples where the number of samples is not known. This is the exact scenario we have here: in our sample we have multiple mitochondrial (or bacterial or viral) genomes, but we do not know exactly how many. Thus we will use the
--pooled-continuousoption of FreeBayes to generate frequency-based variant calls as well as some other options
- Rahul Nayak created a new bio-script Corona variant calling steps !
