BOL: All Site Activity

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- Jit@jit.aber
Jit bookmarked Genome Assembly Workshop 2020 1745 days ago

Our team offers custom bioinformatics services to academic and private organizations. We have a strong academic background with a focus on cutting edge, open source software. We replicate standard analysis pipelines (best practices) when...

https://ucdavis-bioinformatics-training.github.io/2020-Genome_Assembly_Workshop/snakemake/snakemake_intro
- Jit@jit.aber
Jit created a new bio-script Commands to transfer files and folder in docker ! 1746 days ago
- Jit@jit.aber
Jit answered the question How to get the container id ? 1746 days ago

sudo docker container ls --all will list all container in ur system.
- BioStar@biostar
BioStar asked How to get the container id ? 1746 days ago
- BioStar@biostar
BioStar bookmarked RNA-Seq differential expression work flow using DESeq2 1747 days ago

One of the aim of RNAseq data analysis is the detection of differentially expressed genes. The package DESeq2 provides methods to test for differential expression analysis.

http://www.sthda.com/english/wiki/rna-seq-differential-expression-work-flow-using-deseq2
- BioStar@biostar
BioStar posted to the wire 1747 days ago

RNA seq tutorial https://github.com/griffithlab/rnaseq_tutorial #Tutorial #RNA_seq
- Jit@jit.aber
Jit posted to the wire 1749 days ago

Whole genome alignment https://pdfs.semanticscholar.org/f64b/68973f1e836e1fcf697de709c3ffb1225ce5.pdf #Whole #Genome #Alignment #PPT
- Jit@jit.aber
Jit posted to the wire 1749 days ago

Evolutionary evidence of chromosomal rearrangements through SNAP https://www.diva-portal.org/smash/get/diva2:1580925/FULLTEXT01.pdf #Bioinformatics #Computational
- Jit@jit.aber
Jit posted to the wire 1749 days ago

https://www.sciencemag.org/news/2021/08/new-sars-cov-2-variants-have-changed-pandemic-what-will-virus-do-next? #Pandemic #Variants
- Jit@jit.aber
Jit posted to the wire 1750 days ago

#Convert #FASTQ to FASTA and set bases of #quality lower than 20 to N $ seqtk seq -aQ64 -q20 -n N IN.fastq > OUT.fasta
- Jit@jit.aber
Jit created a new bio-script Commandline for paired end reads simulation with BBMap ! 1751 days ago
- Jit@jit.aber
Jit created a new bio-script Install Bwise using conda ! 1751 days ago
- BioStar@biostar
BioStar posted a new ad in the ResearchLabs Josefa González Lab 1751 days ago
- BioStar@biostar
BioStar posted a new ad in the Opportunity Bioinformatics Scientist, Production Bioinformatics @ South San Francisco, CA 1751 days ago
- BioStar@biostar
BioStar bookmarked The Snakemake Wrappers repository 1751 days ago

The Snakemake Wrapper Repository is a collection of reusable wrappers that allow to quickly use popular tools from Snakemake rules and workflows. More at https://github.com/snakemake/snakemake-wrappers

https://snakemake-wrappers.readthedocs.io/en/stable/
- BioStar@biostar
BioStar posted to the wire 1751 days ago

HOW TO CONVERT A PYTHON SCRIPT TO MODULE https://tutswiki.com/convert-python-script-to-module/ #Module #Python
- BioStar@biostar
BioStar posted a new ad in the Opportunity Tech and Bioinformatics roles at Basepaws 1751 days ago
- BioStar@biostar
BioStar answered the question What are difference between Unique and Distinct K-mers ? 1752 days ago

Distinct k-mers are counted only once, even if they appear multiple times, whereas Unique k-mers appear only once.
- Shruti Paniwala@shruti
Shruti Paniwala asked What are difference between Unique and Distinct K-mers ? 1752 days ago
- BioStar@biostar
BioStar posted to the wire 1752 days ago

DOME: recommendations for supervised machine learning validation in biology https://www.nature.com/articles/s41592-021-01205-4 #Machine #Learn #Recommendation

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