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There are two methods for ancient WGD detection, one is collinearity analysis, and the other is based on the Ks distribution map. Among them, Ks is defined as the average number of synonymous substitutions at each synonymous site, and there is...

https://training.galaxyproject.org/training-material/topics/visualisation/tutorials/circos/tutorial.html Visualization with circos #R #Circos #Steps #Method #Tutorial

Flanker, a Python package which performs alignment-free clustering of gene flanking sequences in a consistent format, allowing investigation of mobile genetic elements (MGEs) without prior knowledge of their structure. Flanker can be...

Perl provides various features and operators for the execution of external commands (described as follows), which are unique in their own way. They vary slightly from one another, making it difficult for Perl beginners to choose between them.

Key features Filters SNVs from any variant caller to remove false positives Calculates metrics based on BAM files and provides filtering not possible with other tools Fully user-configurable filtering (including which filters to use and their...

Computational Genomics with R http://compgenomr.github.io/book/ #R #Computational #Genomics #Book #Tutorial

Bioinformatics courses for African countries https://www.uom.ac.mu/index.php/ngs-bioinformatics-course #Africa #Courses #NGS #Network

$ export PERL5LIB=/usr/share/perl5/:/usr/lib/x86_64-linux-gnu/perl5/5.26/Text/ #Set #Path #Perl #Module

#User can find the location using V.pm module (base) jit@jit-Lenovo-ideapad-320-15ISK:~/Downloads/alienomics$ sudo apt install libv-perlReading package lists... DoneBuilding dependency tree       Reading state...

How to find the location of the module installed