BOL

Awesome Machine Learning https://github.com/josephmisiti/awesome-machine-learning#perl-data-analysis--data-visualization #AI #Machine #Learn #Teach #Repo

Package suites gather software packages and installation tools for specific languages or platforms. We have some for bioinformatics software.

Workflow Managers

Delly – Structural variant discovery by integrated paired-end and split-read analysis. [ paper-2012 ] lumpy – lumpy: a general probabilistic framework for structural variant discovery....

Bioinformatics startup https://www.genique.co/

DeepConflation based CNN model is used to generate alignment of fasta file . Model try to match a query string in a referance genome to provide location of match. https://github.com/gguptaiitd/DeepConflation

We demonstrate a novel approach forlocal alignment of DNA reads with respect to reference genome.For this process we have used Skip-gram model for creatingencoding(Nucl2Vec) and k-nearest neighbor for the alignment.With our new approach we have...

DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets and found that its accuracy and performance is comparable to existing tools...

http://tmbuniv.ac.in/wp-content/uploads/2019/10/Admission-notice.pdf #Bioinformatics #Bihar #TBU

I guess, installing reshape package will fix it ! install.packages("reshape").

[main] Real time: 2.026 sec; CPU: 1.798 secPlotting the coverageError in library(reshape) : there is no package called ‘reshape’Execution halted./setu.sh -k yes -m pe -t 1 -r SRR11140750_1.fastq.gz,SRR11140750_2.fastq.gz 11,91s user...

AlignGraph2 is the second version of AlignGraph for PacBio long reads. It extends and refines contigs assembled from the long reads with a published genome similar to the sequencing genome. More...

The pipeline can use information from scaffolded assemblies (for example from HiC or 10X Genomics), or even from diverged (~65-100 Mya) reference genomes for ordering the contigs and thus support the assembly process. This typically results in...