BOL

Extract list of read ID from bam file: samtools view mbi.sorted.bam |perl -ne '/ID/ && print' > extractedID.sam #Extract #Ids #SAM #BAM #NGS

FastaQ 2 Fasta Oneliner: paste - - - -< totalRNA_placental_1.fastq | perl -pale'$_="@F[0..1]"'|tr "\^@" "\>" | perl -pale 's/\s/\n/g' #Oneliner #NGS #FastaQ #Fasta

The next-generation sequencing knowledge bank http://www.ecseq.com/support.html

Sequencing based service

NGS tutorial for novice http://www.uni-mainz.de/FB/Biologie/Anthropologie/487_ENG_HTML.php

The FindMotif.pl program uses position-specific scoring matrices to search for sequences similar to a consensus sequence. Find more at http://www.people.vcu.edu/~elhaij/IntroBioinf/Notes/PSSM-Perl.html

Thanks for starting such a useful bookmark, hope we will see many more useful tutorial website links over here. I know one webpage which connect to many more bioinformatics tutorial pages. http://www.thebioinformatica.com/onlinetutorial.htm

IIT Delhi Bioinformatics tutorial links at https://www.scfbio-iitd.res.in/tutorial/bioinformaticstutorial.htm