BOL: All Site Activity

All Site Activity

- Neel@neelam
Neel posted a new ad in the Opportunity Scientist-B (Bioinformatics) at AIIMS, Delhi 1476 days ago
- Neel@neelam
Neel bookmarked SneakySnake: A Fast and Accurate Universal Genome Pre-Alignment Filter for CPUs, GPUs, and FPGAs 1476 days ago

The first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. SneakySnake greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short...

https://github.com/CMU-SAFARI/SneakySnake
- Neel@neelam
Neel bookmarked Liftoff: An accurate GFF3/GTF lift over pipeline 1476 days ago

Liftoff is a tool that accurately maps annotations in GFF or GTF between assemblies of the same, or closely-related species. Unlike current coordinate lift-over tools which require a pre-generated “chain” file as input, Liftoff is a...

https://github.com/agshumate/Liftoff
- Neel@neelam
Neel bookmarked COVID Moonshot: An international effort to DISCOVER A COVID ANTIVIRAL 1476 days ago

The COVID Moonshot is an ambitious crowdsourced initiative to accelerate the development of a COVID antiviral. We work in the open with no intellectual property constraints. This way, any scientist can view submitted drug designs and experimental...

https://covid.postera.ai/covid
- Jit@jit.aber
Jit created a new bio-script Install SibeliaZ in your Linux cluster ! 1476 days ago
- Rahul Nayak@rahul
Rahul Nayak bookmarked Caretta – A multiple protein structure alignment and feature extraction suite 1478 days ago

Caretta – a multiple protein structure alignment and feature extraction suite Caretta, a multiple structure alignment suite meant for homologous but sequentially divergent protein families which consistently returns accurate alignments...

http://www.bioinformatics.nl/caretta/
- Neel@neelam
Neel commented on the blog How to install Perl modules manually, using CPAN command, and other quick ways in the group Perl *PIPERs 1478 days ago

Check the perl module Test if dependencies are met by running this perl one-liner: perl -e "use JSON::XS;"
- Neel@neelam
Neel posted a new ad in the Opportunity Two postdoc positions to study multiscale genome evolution and cephalopod gene regulation... 1478 days ago
- Jit@jit.aber
Jit answered the question How does MCScanX classify ? 1483 days ago

MCScanX classify genes into five categories 1. singletons: genes without any duplicate 2. dispersed: duplicates occurring more than 10 genes apart or on different scaffolds 3. proximal: duplicates occurring on the same scaffold at most 10 genes...
- Radha Agarkar@radhaagarkar
Radha Agarkar asked How does MCScanX classify ? 1483 days ago

MCScanX classify genes into five categories, singletons, dispersed, proximal, tandem, and segmental. I am wondering the details definition of these ...
- LEGE@lege
LEGE posted a new ad in the Opportunity Postdoc in comparative genomics 1487 days ago
- LEGE@lege
LEGE commented on the blog Tools to detect synteny blocks regions among multiple genomes 1488 days ago

halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments https://pubmed.ncbi.nlm.nih.gov/32463100/
- Neel@neelam
Neel published a news post NCBI BLAST have added new columns to the Descriptions 1494 days ago

NCBI BLAST have added new columns to the Descriptions Table for web BLAST output.
- Jit@jit.aber
Jit commented on the blog Ten International Scholarships for Indian Biotechnology and Bioinformatics Students 1497 days ago

Funding opportunities for PhD and postdocs in India https://indiabioscience.org/media/articles/GRANTS-BOOK-FINALVer_09111.pdf
- Jit@jit.aber
Jit commented on the blog Ten International Scholarships for Indian Biotechnology and Bioinformatics Students 1497 days ago

Useful books for Indian scholarships https://indiabioscience.org/media/articles/GRANTS-BOOK-FINALVer_09111.pdf
- BioStar@biostar
BioStar bookmarked MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data 1499 days ago

The algorithm presented herein, Mining Algorithm for GenetIc Controllers (MAGIC), uses ENCODE ChIP-seq data to look for statistical enrichment of TFs and cofactors in gene bodies and flanking regions in gene lists without...

https://github.com/asroopra/MAGIC
- Neel@neelam
Neel bookmarked DnaSP: DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms 1500 days ago

DnaSP, DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms using data from a single locus (a multiple sequence aligned -MSA data), or from several loci (a Multiple-MSA data, such as formats generated by some...

http://www.ub.edu/dnasp/
- Neel@neelam
Neel bookmarked IRscope: an online program to visualize the junction sites of chloroplast genomes 1500 days ago

eMPRess, a software program for phylogenetic tree reconciliation under the duplication-transfer-loss model that systematically addresses the problems of choosing event costs and selecting representative solutions, enabling users to make more robust...

https://sites.google.com/g.hmc.edu/empress/home
- Neel@neelam
Neel bookmarked vsFilt: A tool to improve virtual screening by structural filtration of docking poses 1501 days ago

The vsFilt is the first open application for post-docking structural filtration, available as a web-server. The new tool is easy to use and configure to detect a wide range of interaction types that are known to be involved in molecular recognition,...

https://biokinet.belozersky.msu.ru/vsfilt
- Neel@neelam
Neel posted to the wire 1501 days ago

Bioinformatics scientist-D at ICMR lab India https://main.icmr.nic.in/sites/default/files/career_opportunity/ICMR_Advertisement_06112020.pdf #Scientist #ICMR

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