BOL
Log in
Username or email
Password
Remember me
Register
Lost password
Activity
News
Opportunity
ResearchLabs
Questions
Pages
Discussion
More
BioScripts
Blogs
Bookmarks
Files
Fun
Groups
Polls
The Wire
Tryst
Videos
Our Sponsors
Download
BioinformaticsOnline(BOL) Apps
in your chrome browser.
The Wire
#Tricks
Wire posts tagged with 'Tricks'
BioJoker
@biojoker
Thread
By
BioJoker
1853 days ago
Nano tricks
https:/
/
wiki.gentoo.org/
wiki/
Nano/
Basics_Guide
#Nano
#Tricks
Abhimanyu Singh
@abhimanyu
Thread
By
Abhimanyu Singh
2574 days ago
Show before(B) and after(A) the matching region $ grep -B 3 -A 2 foo README.txt
#Linux
#Tricks
#View
#Grep
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
2636 days ago
Remove all blank lines from file. perl -i.bak -n -e "print if /\S/" ../finalSample.fa
#Perl
#Tricks
#PerlOneliner
Jit
@jit.aber
Thread
By
Jit
2711 days ago
Accept file from STDIN in Perl my $infh = \*STDIN; my $outfh = \*STDOUT
#Perl
#Tricks
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
2735 days ago
Extract ten lines below matched string with grep: grep -A 10 "string" filename1 ; -B for above and -C for both
#grep
#Linux
#Tricks
#Lines
#Matches
Jit
@jit.aber
Thread
By
Jit
2795 days ago
Split the text file with line number in Linux: wc -l abc.txt and then: split -l 60000 abc.txt
#Split
#Break
#Line
#Ubuntu
#Linux
#Tricks
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
2811 days ago
Little correction, I guess you mean concatenate many files: $ for a in *.txt ; do cat $a >> newFile ; done
#Linux
#Tricks
Neelam Jha
@neelam
Thread
By
Neelam Jha
2812 days ago
Contact many files: $ for a in *.txt ; do cat $a >> newFile ; done
#Linux
#Tricks
Jit
@jit.aber
Thread
By
Jit
2813 days ago
Find a file with certain size and delete them: $ find . -name "see-D-d-ALN_*" -size -10k -delete
#Delete
#Size
#Linux
#Tricks
Jit
@jit.aber
Thread
By
Jit
2827 days ago
du -sh * will give you the size of all the directories,files etc in current directory in human readable format.
#Linux
#Size
#Tricks
#Folders
#Files
Jit
@jit.aber
Thread
By
Jit
2880 days ago
Extract reference nucleotide from BAM file: samtools view your.bam | awk '{print substr( $10, 100, 1)}'
#SAM
#BAM
#Samtools
#Tricks
#NGS
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
3243 days ago
Perl Elements to Avoid
http:/
/
perl-begin.org/
tutorials/
bad-elements/
#Perl
#Tricks
#Avoid
#Learn
#Beginners
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
3243 days ago
Fancy One-Liner
http:/
/
userweb.eng.gla.ac.uk/
umer.ijaz/
bioinformatics/
oneliners.html
#Perl
#OneLiner
#Bioinformatics
#Quick
#Common
#Tricks
#CommandLine
#Terminal
Jitendra Narayan
@admin
Thread
By
Jitendra Narayan
3383 days ago
Get line number with Perl $fh->input_line_number()
#Perl
#Tipsoftheday
#Tricks
John Parker
@parker
Thread
By
John Parker
3641 days ago
Bacterial genome assembly tips using Valvet
http:/
/
pathogenomics.bham.ac.uk/
blog/
2009/
09/
tips-for-de-novo-bacterial-genome-assembly/
#Assembly
#NGS
#Bacteria
#Genome
#Tricks
#Tips
#Velvet
« Previous
1
2
Next »