JRF/Traineeship/Studentship Bioinformatics
Eligibility : ME/M.Tech(Bio-Informatics/Bio-Chemistry Engg, CSE), MSc(Bio-Informatics, CS)
Location : Delhi
Last Date : 18 Dec 2015
Hiring Process : Walk - In
IARI - Job...
www.darwintreeoflife.org - The specimens were collected by the Oxford Wytham Woods and Edinburgh Lohse lab teams. DNA extraction and sequencing was carried out by the Sanger Institute Scientific Operations teams. Assemblies were carried out by the Tree of Life team (Shane...
JRF Bioinformatics
Eligibility : ME/M.Tech(Bio-Informatics/Bio-Chemistry Engg), MSc(Bio-Informatics)
Location : Hyderabad
Last Date : 30 Dec 2015
Hiring Process : Written-test
University of Hyderabad
JRF Bioinformatics job position...
github.com - SHAMAN is a shiny application for differential analysis of metagenomic data (16S, 18S, 23S, 28S, ITS and WGS) including bioinformatics treatment of raw reads for targeted metagenomics, statistical analysis and results visualization with a large...
They develop machine learning techniques to better understand chromatin biology. These models and algorithms transform high-dimensional functional genomics data into interpretable patterns and lead to new biological...
github.com - FastProNGS to integrate the quality control process with automatic adapter removal. Parallel processing was implemented to speed up the process by allocating multiple threads. Compared with similar up-to-date preprocessing tools, FastProNGS is by...
hal.archives-ouvertes.fr - Pros and cons of HairSplitter Limitations of HairSplitter:
Not very fast: it re-polishes the whole assembly
Limited in the number of haplotypes
Strengths of HairSplitter:
Very modular, can be used with any assembler
Naive: makes no...
github.com - Jabba is a hybrid error correction tool to correct third generation (PacBio / ONT) sequencing data, using second generation (Illumina) data.
Input
Jabba takes as input a concatenated de Bruijn graph and a set of sequences:
the de Bruijn graph...
www.phrap.org - Supports Illumina, 454, other Next-Gen and Sanger Reads and allows mixtures of these read types
Consed includes BamScape which can view bam files with unlimited numbers of reads. BamScape can bring up consed to edit reads and the reference sequence...
www.broadinstitute.org - Spines
Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad Institute. It provides basic data structures for efficient data manipulation (mostly genomic sequences, alignments,...