Jit
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List of popular bioinformatics software/tools
By Jitendra Narayan 4715 days ago Comments (28)samtools.sourceforge.net - In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.pbalign: maps PacBio reads to reference sequences and saves alignments to a BAM file
By Jit 2942 days agogithub.com - pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. The output Compare HDF5 file...Consed--A Finishing Package (BAM File Viewer, Assembly Editor, Autofinish, Autoreport, Autoedit,...
By Neel 2318 days agowww.phrap.org - Supports Illumina, 454, other Next-Gen and Sanger Reads and allows mixtures of these read types Consed includes BamScape which can view bam files with unlimited numbers of reads. BamScape can bring up consed to edit reads and the reference sequence...
Structure of Binary files used for storing sequencing data-bam and sff
Last updated 4689 days ago by Rahul AgarwalMany times bioinformatician needs to parse binary files like bam and sff. Advantage of binary files is that they occupy less space in memory with maximum information content. Link for those who looking for structure of Bam and sff...Panacus : A Counting Tool for Pangenome Graphs
By Neel 729 days agogithub.com - panacus is a tool for calculating statistics for GFA files. It supports GFA files with P and W lines, but requires that the graph is blunt, i.e., nodes do not overlap and consequently, each link (L) points...Caretta – A multiple protein structure alignment and feature extraction suite
By Rahul Nayak 2003 days agowww.bioinformatics.nl - Caretta – a multiple protein structure alignment and feature extraction suite Caretta, a multiple structure alignment suite meant for homologous but sequentially divergent protein families which consistently returns accurate alignments...Statistics and probability
By Jit 3504 days agowww.khanacademy.org - Topics Displaying and describing data Modeling distributions of data Describing relationships in quantitative data Designing studies Probability Random variables Sampling distributions Confidence intervals (one sample) Significance tests...17 Marie Curie PhD position available immediately
Kindly look into following webpage: http://medhealth.leeds.ac.uk/info/1450/scholarships/1795/marie_curie_phd_training_network The closing date for application will be 26 June 2015.gfastats: The swiss army knife for genome assembly.
By Abhi 1374 days agogithub.com - gfastats is a single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation. gfastats also allows seamless fasta<>fastq<>gfa[.gz]...
