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PLAR: Pipeline for lncRNA annotation from RNA-seq data
By Abhi 1081 days agowww.weizmann.ac.il - Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), and synteny). One is comparing human GENCODE genes (from GENCODE v30) to lncRNAs...gget
By BioStar 632 days agogithub.com - gget is a free, open-source command-line tool and Python package that enables efficient querying of genomic databases. gget consists of a collection of separate but interoperable modules, each designed to facilitate one type of...Creating Genetic Maps from GBS data
By BioStar 472 days agobioinformaticsworkbook.org - Genetic map, as the name suggest is simply knowing the relative positions of specific sequences across the genome. There are various methods to generate them, but most popular method is to use a cross between the known parents and examining their...Data Visualization in Bioinformatics: Useful and Eye-Catching Plots for Data Analysis
By LEGE 8 days agoThe choice of visualization can significantly impact the insights gained from bioinformatics data. By selecting plots tailored to your data type and analysis goals, you can effectively communicate your findings and make your research more impactful....GA4GH Data Working Group
By Jitendra Prajapati 3199 days agohttp://ga4gh.org/#/ - GA4GH Data Working Group Led by David Haussler (UCSC) and Richard Durbin (Sanger Institute), the Data Working Group (DWG) of the Global Alliance brings together the leading Genome Institutes and Centers with IT industry leaders to create global...Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
By Shruti Paniwala 2251 days agowww.well.ox.ac.uk - Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By using local realignment of reads and local assembly it achieves both high sensitivity and high specificity. Platypus can detect...Comparative Genomics Data Set Including 240 Mammals Released !
By Jit 1495 days agoThe genome of 130 mammals was sequenced by a large international consortium and the data was analyzed together with 110 existing genomes to allow scientists to identify the important positions in the DNA.AMR Database !
By LEGE 201 days agogithub.com - ARG-ANNOT. PMID: 24145532 CARD. PMID: 23650175 MEGARes PMID: 27899569 NCBI BioProject: PRJNA313047 plasmidfinder PMID: 24777092 resfinder. PMID: 22782487 VFDB. PMID: 26578559 SRST2's version...Pacasus: Correction of palindromes in long reads from PacBio and Nanopore
By BioStar 2233 days agogithub.com - Tool for detecting and cleaning PacBio / Nanopore long reads after whole genome amplification. Check the poster from the Revolutionizing Next-Generation Sequencing (2nd edition) conference in the source...Now time is come to revolutionize amino acid sequencing by Nanopore technology
By Rahul Agarwal 3913 days agowww.eurekalert.org - Amino acid sequencing by Nanopore recognition tunneling method
