Jit
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U-Plot: Genome U-Plot sample implementation
By Rahul Nayak 1759 days agogithub.com - The Genome U-Plot is a JavaScript tool to visualize Chromosomal abnormalities in the Human Genome using a U-shape layout.SneakySnake: A Fast and Accurate Universal Genome Pre-Alignment Filter for CPUs, GPUs, and FPGAs
By Neel 1467 days agogithub.com - The first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. SneakySnake greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short...Simons Genome Diversity Project
By Jit 1328 days agowww.simonsfoundation.org - Complete genome sequences from more than one hundred diverse human populations All genomes in the dataset were sequenced to at least 30x coverage using Illumina technology. The sequencing reads were mapped and genotyped using a customized procedure...HISAT2 Index Files Download !
By LEGE 1198 days ago Comments (1)daehwankimlab.github.io - Resource for downloading all the HISAT2 related files Please cite: Kim, D., Paggi, J.M., Park, C. et al. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nat Biotechnol 37, 907–915...Peregrine & SHIMMER Genome Assembly Toolkit
By Abhi 1106 days agogithub.com - Peregrine is a fast genome assembler for accurate long reads (length > 10kb, accuracy > 99%). It can assemble a human genome from 30x reads within 20 cpu hours from reads to polished consensus. It uses Sparse HIereachical MimiMizER (SHIMMER)...Comparative Genomics Workshops !
By Rahul Nayak 1066 days agowww.genome.gov - This meeting's objective was to obtain a big picture look at the current state of the field of comparative genomics with a focus on commonalities across genomic investigations into humans, model organisms (both traditional and...Environmental Genomics Group SciLifeLab/KTH Stockholm
By BioStar 757 days agohttps://github.com/envgen - Useful Metagenomics resourcesNCBI Datasets pages
By BioStar 533 days agoAssembly and Genome record pages now redirect to new NCBI Datasets pages.piRNA and Bioinformatics: Decoding the Guardians of the Genome
By LEGE 19 days agopiRNAs are the unsung guardians of the genome, safeguarding genetic material from transposable elements and contributing to gene regulation and epigenetic programming. Bioinformatics has opened the floodgates of discovery, unraveling the...Genome Origami
By Jitendra Narayan 3667 days agoThere are only 10,000 loops instead of the predicted millions, and they form on/off switches in DNA.
