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SATSUMA : Highly sensitive whole-genome synteny alignments.
By Jit 3589 days agosatsuma.sourceforge.net - Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the conserved order and orientation of features, such as protein coding genes,...Gene Synteny Database
By Jit 3371 days agowww.ncbi.nlm.nih.gov - Comparative genomics remains a pivotal strategy to study the evolution of gene organization, and this primacy is reinforced by the growing number of full genome sequences available in public repositories. Despite this growth, bioinformatic tools...VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity
By Abhimanyu Singh 2688 days agowww.ncbi.nlm.nih.gov - VGSC, the Vector Graph toolkit of genome Synteny and Collinearity, and its online service, to visualize the synteny and collinearity in the common graphical format, including both raster (JPEG, Bitmap, and PNG) and vector graphic (SVG, EPS, and...SynVisio: An Interactive Multiscale Synteny Visualization Tool for McScanX.
By Jit 2110 days agosynvisio.github.io - SynVisio lets you explore the results of McScanX a popular synteny and collinearity detection toolkit and generate publication ready images. SynVisio requires two files to run: The simplified gff file that was used as an...JCVI:Python utility libraries on genome assembly, annotation and comparative genomics
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By Rahul Nayak 1830 days agoThere are two methods for ancient WGD detection, one is collinearity analysis, and the other is based on the Ks distribution map. Among them, Ks is defined as the average number of synonymous substitutions at each synonymous site, and there is...DNA tale of 3 to 4 years old Serbia boy
By Rahul Agarwal 4487 days agoAncient DNA study of Serbian boy!!!Bionics, Transhumanism, and the end of Evolution (Full Documentary)
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By Rahul Nayak 4503 days agoA public lecture by Dr Stephen J O'Brien at the UCD Earth Institute, University College Dublin, Ireland. Dr O'Brien is a world leading molecular biologist and dedicated conservationist who uses the tools of molecular biology to help protect...The Minerva Research Group for Bioinformatics
The focus of the bioinformatics group is to use computational approaches to gain an insight into genome evolution in primates. http://www.eva.mpg.de/genetics/bioinformatics/overview.html?Fsize=0%2C%20%40%2F%27 Kelso Group Department of...
