687 days ago
Five unique traits of effective computational biologist
...al keywords into a search engine or posting a question at Stack Overflow or the BioStars forums. I have entered problems into search engines that generate no results, and every questio...3977 days ago
The 5 reasons to mistakes at bioinformatics work !!!
...t all are interdependent and need proper configuration. I face the same kind of problem with Evolver :( … 4.Folders missing: The pipelines generate lots of data, and we keep the...2133 days ago
3261 days ago
Assembly and diploid architecture of an individual human genome via single-molecule technologies
The research work shows that it is now possible to integrate single-molecule and high-throughput sequence data to generate de novo assembled genomes that approach reference quality. h...3248 days ago
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Genome Assembly Tools and Software - PART2 !!
...er and orient sequence scaffolds generated by NGS and assemblers into l...bler and variant caller that can generate high quality assemblies and v...g-based simulation. SIS – Generate Draft Genome Sequence Scaffol...ndalone package to assemble ESTs generated using Sanger and/or Roche-45...2713 days ago
Awesome perl frameworks, libraries and software - PART 2
...le. PerlGameDev/Box2D-perl - Box2D for perl Ovid/Corinna - Generate Perl classes from XML schemas...akt.tv dscho/dsstore - A remote-hg mirror of the Perl project to generate .DS_Store files (even on non-...2521 days ago
3973 days ago
Most Commonly used Awk by Bioinformatician
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An entire genome written in lab
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Accelerating Biology 2014:The Next Wave (18-22 February, 2014)
...unrelenting computational power is required to decipher pieces of data generated through high throughput tech...rmation that will help to answer many mysteries of life. To be able to generate knowledge from the oceans of...3872 days ago
3976 days ago
MedGenome is looking for Genome Analysts
...e is looking for Genome Analysts (5-6 Positions), ambitious and energetic who will work both independently and as part of a collaborative team to generate data from various genomics-or...1247 days ago
3946 days ago
The Ontario Institute for Cancer Research (OICR) Genomics Lab , Toronto, Canada.
...t with these products (chemicals, RNAi). The existence of these tools resulted in the creation of facilities that use robotics and informatics to generate high-throughput screens of DN...3946 days ago
Introduction to programming. Write short programs that generate graphics and animation.
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Dr. Ken Buetow: IS & Personalized Medicine Lecture-Part 1
...is drawn from fragmented research literature generated by "siloed" reductionist bas...needed "tool" to tackle this challenge -- to generate the necessary evidence to sup...atory also developed methods and pipelines to generate and apply genome-wide genetic...3898 days ago
Generating a random string with Perl
#!/usr/bin/perl # This function generates random strings of a given length sub generate_random_string { my $length_of...ength of # the random string to generate my @chars=('a'..'z','A'.....domstring) { # rand @chars will generate a random # number between...2934 days ago
Implementation of biological random mutation with Perl
#!/usr/bin/perl -w use strict; use warnings; #sequence for a better recognition my $DNA="AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA \ n";...2928 days ago
443 days ago
Comment on "Calling variants in non-diploid systems"
...l (or bacterial or viral) genomes, but we do not know exactly how many. Thus we will use the --pooled-continuous option of FreeBayes to generate frequency-based variant calls...1071 days ago