2967 days ago
Computer simulation of genetic mechanism !!
...aysicsabc/ BEERS BEERS was designed to benchmark RNA-Seq alignment algorithms and also algorithm...ages/rmetasim/index.html RNA Seq Simulator RSS takes SAM alignment files from RNA-Seq data and s...3017 days ago
Various scholarships around the world !!
...bsp;Fellowship program provides relevant and contemporary nephrology training to physicians.Award Details: The total sum of the grant is in alignment with the length of the traini...2859 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets and found tha...1188 days ago
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
We demonstrate a novel approach forlocal alignment of DNA reads with respect to refe...ing(Nucl2Vec) and k-nearest neighbor for the alignment.With our new approach we have reduced computation cost forlocal alignment , while achieving accuracy co...1188 days ago
Bioinformatics approach to Boar Taint
...>10X average coverage. Short reads generated from these samples mapped to Sus Scrofa version 10.2 reference assembly using Bowtie2. Alignment file then used for calling SN...3831 days ago
Bio++ : C Language libraries for your biological need
...vailable for inner storage, with several implementations. Support for alignments.Various I/O formats supporte...rantham) + import from any AAIndex entry.Consensus sequences.Pairwise alignment.Similarity score computation....3990 days ago
BioRuby :Ruby packages for biologist
...Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other...use of Ruby's extremely high descriptive power. Classes for Multiple alignment (Bio::Alignment), Gene Ontolo...3989 days ago
3989 days ago
3988 days ago
3961 days ago
Update Genome Workbench 2.7.15 released
...including graphical sequence views, various alignment views, phylogenetic tree view...ures in Genome Workbench 2.7.15 Multiple Alignment View: implemented adaptive fe...ol: improved diagnostics of errors Multiple Alignment View: optimizations to avoid...3763 days ago
Visiting Scientist - Computational Genomics
...work as team as well as independently with minimal support. Fluency in spoken and written English is essential. NGS techniques like sequence alignment, variant calling based on who...2526 days ago
Bioinformatician - Purdue Cancer Center
...tics Proficiency in writing scripts using Perl, Python, Java, or equivalent languages Proficiency in R and UNIX/LINUX Knowledge of genomics, alignment, annotation, bioinformatics,...1228 days ago
3270 days ago
Bioinformatician become producer/director !!!
...jayenge Raju ban gaya Genefinder. Har Ligand jo dock karega. Alignment to hona hi tha. Mera sequenc...Program Tak Haan Maine Bhi ClustalW Kiya Hai GeneScan Karke Dekho Alignment Apna Sequence Parayi *Warn...3961 days ago
3950 days ago
3951 days ago
Download genome using NCBI esearch command line !
...uery "NC_005956.1" | efetch -format fasta > seq1.fa esearch -db nucleotide -query "CP003784.1" | efetch -format fasta > seq2.fa #fastANI for alignment free comparision #conda inst...1143 days ago
Blast result parser with Perl and Bioperl
...# get the start and the end of the query sequence in the alignment print OUT $hsp->start('q...# get the start and the end of the hit sequence in the alignment print OUT $hsp->start('h...2956 days ago
3962 days ago
3748 days ago
Comment on "Basic command-line to run BLAST"
...for matches to those words in the database. It then expands the matches to identify longer regions of similarity, called "alignments," and calculates a score for each alignment that reflects its degree of s...463 days ago
Comment on "Basic command-line to run BLAST"
...ng any homology search. BLAST (Basic Local Alignment Search Tool) is a widely used...on about the sequences that matched the query sequence, including the alignment score, identity, and e-value....465 days ago