Results for "BLAST databases"
Blogs
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same ribbon”) is a collection of contiguous gene...sequences (scaffolds, chromosomes, BACs, etc.). Based on tab – delimited BLAST res...2625 days ago
List of bioinformatics packages for NGS analysis !
Package suites gather software packages and installation tools for specific language.... Contains the very useful Entrez package for API access to the NCBI databases. [ paper-2009 |&nbs...1157 days ago
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Bookmarks
Public Databases for Bioinformatics !
https://www.nature.com/articles/s41467-020-17155-yServer Infrastructure: File Ser...bam as we as the GENCODE annotation v29 from ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release...1154 days ago
A Brief Bioinformatics Tutorial
This is about how to use a computer to find what is known about a gene of interest and also how to get new insight...you will see how to look efficiently for a particular protein sequence, how to blast it...3652 days ago
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Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it allow...),A new library, Bio++ RAA (Remote Acnuc Access), allowing you to fetch public databases like GenBank, EMBL or SwissPr...3962 days ago
- I found several useful bioinformatics articles which exaplain, define and elaborate the bioinformatics in sci...ary Sequence Analysis - Database Searching by B. Golding Jan 1996. Fasta, blast, bl...
3936 days ago
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Top-level pages
- ...e easily through links. Also databases of scientific literature (suc...hrough the introduction of PsiBLAST [3]; studying evolutionary aspec...and drug resistance. Patient databases with genetic profiles, e.g. f...er W, Lipman DJ (1997) Gapped BLAST and PSI–BLAST: a new genera...
3962 days ago
- Data mining, the extraction of hidden predictive information from large databases. Data mining is becoming an i...ledge the data is hiding. They scour databases for hidden patterns, finding...03_05.pdf DATA MINING OF MICROARRAY DATABASES FOR HUMAN LUNG CANCER: h...
3961 days ago
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Wire posts
News
- How to operate blast via shell ? Is any one please tell me how .sh file operate a blast query in blast database
3936 days ago
- In current era, we are handling huge amount of genomics data, and analysi...arge-scale sequence studies requiring BLAST-based analysis produce huge a...data to be parsed. There are several BLAST parsers are available, but th...develope a new and fast fast package "BlaSTorag...
3904 days ago
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Opportunity posts
- van Noort Group is looking for PhD fellows We currently access an unprecedented k...throughput sequencing analysis methods, machine learning, protein interaction databases, perl/python scripting or Bio...
3963 days ago
Researcher in computer science/biology
Researcher in Computer Science at the Computational Biology Unit - temporary employm...ce in Python, R, Perl, Linux-based operating systems and moreover knowledge of databases and web programming will be a...3961 days ago
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ResearchLabs posts
Donnelly Centre of Cellular & Biomolecular Research (CCBR), Bader Lab
We study the organization and evolution of biological sy...ment of open-source biological pathway and network databases and visualization and analysi...molecular profiles Biological pathway and network databases and analysis tools Link @...3963 days ago
- This Bioinformatics Resource (Virology.ca, the Canadian half of the now defunct VBRC...Iridoviruses Baculoviruses Research Area Custom searches of the viral databases Building new tools . The ge...
3963 days ago
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Fun
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names will be like this.... BLAST : Eak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST kiya. NCBI wale Data le jaye...aun. Algo Banya Apne. MOTIF mil gaya. BLASTana...3933 days ago
The Best Bioinformatics / Computational Biology Quotes
Bioinformatician are not anti-social; We are just genome friendly. Bioinformatician...ome make very fast, very accurate mistakes. Let's BLAST it. Some genome never has tr...evelops random features. Go watch CINEMA and have BLAST.3735 days ago
Video
- http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.
3923 days ago
Bioinformatics 101 - Running BLAST
How to format the database for BLAST, run the command, view the output file, and use BioPerl and Perl to parse the output. By David Francis, Ohio State University. Delive...3912 days ago
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Bio-Scripts
Install BLAST in Ubuntu/Linux and Window !
#On ubuntu sudo apt-get install ncbi-blast+ #Ubuntu Conda installation conda install -c bioconda blast #Windows installation Fir...Download ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi...instead http://ftp.ncbi.nlm.nih.gov/blast/exe...1162 days ago
Blast result parser with Perl and Bioperl
#!/usr/local/bin/perl # # Dr. Xiaodong Bai # It may be freely distributed...License. # This script will parse a NCBI blastx output file and output the top N hits of each blast search result. # For each hi...its,$outfile) = @ARGV; print "Parsing the BLAST res...2929 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineer...hat are your company focus and aim? With the increasing amount of data in databases, there is already a massive n...2377 days ago
Groups
Metabolomics is the comprehensive and quantitative analysis of multiple metabolites...ls for this include: mz-Mine XCMS (R code script), and Metalign Metabolomics databases for searching the potential c...3720 days ago
Tags
Blast on Docker, Google Cloud, Amazon Cloud
As announced in a previous post, we offer a Docker version of NCBI BLAST+ that you can use locally or on the Google Cloud where we have pre-loaded BLAST databases. We are happy to announce that the same functionality is now available on the Amazon Cloud. ...Tags: NCBI, BLAST+, Google, BLAST databases, Amazon, Cloud
1411 days ago
Comments
Comment on "Basic command-line to run BLAST"
...ifferent types of queries and databases. The most common programs are blastp, blastn, blastx, tblastn, an...rch. Set the parameters: BLAST has many different parameters tha...l tool for searching sequence databases and can be used for many diff...438 days ago
