BOL: Results for "Extract Region"

Results for "Extract Region"

- Jit@jit.aber
List of gene ontology software and tools
The Gene Ontology (GO) is a set of associations from biological phrases to specific genes that are either chosen by...results, and many other features. Multiple testing corrections are applied to extrac...
3702 days ago
- Jit@jit.aber
Computer simulation of genetic mechanism !!
Computer simulation is the discipline of designing a model...at simulates sequence-like data over large genomic regions in large diploid populations...AMPLE An association simulator for candidate regions or genome scans http://www.h...
2967 days ago
+5 more Blogs

- Rahul Agarwal@raag
Download mutliple fasta file from NCBI in one GO!!
if you have less time, then use three ways mentioned in bookmark link to extract/download all fasta sequences in single click given that you already have a list of GIs or accession IDs . A...
3902 days ago
- Surabhi Chaudhary@surabhi
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the...ty at at a given gene or locus, and then processes each graph independently to extrac...
2957 days ago
+29 more Bookmarks

- Rahul Agarwal@raag
Genomics and sequencing approach for identification of biomarkers to assess the efficacy of TGF-βRI inhibitors (of liver cancer) in vivo
Liver cancer is third leading cause of deaths and fourth m...of particular gene by binding improperly to 3'UTR region of a gene and hence block binding of TF /translation of gene. CpG regions is known to located at promo...
3553 days ago

- Jitendra Narayan@admin
Bioinformatics Definitions
"Bioinformatics is a science of biological predictions and analysis" -- Jitendra Narayan "The mathematical, st...n word–usage analysis. Text recognition systems are being developed that extrac...
3939 days ago
- Jitendra Narayan@admin
Bioinformatics Courses Around the World
Bioinformatics Courses around the world Here is the list...on gene finding, a course on analysis of promoter region,... master: bioinformati...Institute introduction to bioinformatics Regional training course on bioinfor...
3935 days ago
+17 more Top-level pages

- Jit@jit.aber
perl -nle 'if (/^>/) { $sl = 0; print; next } next if ($sl >= 200); $_ = substr($_, 0, 200-$sl) if ($sl + length($_) > 200); $sl += length($_); print;' file.fa >new.fa #Perl #Extract #Fasta
3613 days ago
- Jit@jit.aber
Extract list of read ID from bam file: samtools view mbi.sorted.bam |perl -ne '/ID/ && print' > extractedID.sam #Extract #Ids #SAM #BAM #NGS
3627 days ago
+22 more Wire posts

- Shikha Logwani@shikha
Conserved Domain Database (CDD) version 3.11 released
National Center for Biotechnology Information (NCBI) Conse...lishes the need to mask out compositionally biased regions in query sequences; Dom...results. “Standard” results will provide, for each region on the query sequence, the be...
3719 days ago
- Robert M Willioms@robert
Illumina Smartphone Chip !!!
Illumina, the company that claims it brought human genome sequencing down to $1000 price...nology is computational, it takes some 30 steps to extract genetic data and run it throu...devices, given the fact that some studies require extrac...
3405 days ago
+2 more News

- Abhimanyu Singh@abhimanyu
PostDocs positions in computer science in HELSINKI, FINLAND
Several university departments in the Helsinki region, Finland, are looking for postdoctoral researchers in the field of...ting, Human-centric ubiquitous ICT, Bioinformatics, etc. Helsinki region is a safe, pleasant and attra...
3886 days ago
- Aaryan Lokwani@aaryan
Internships @ Indian Institute of Science
Internships available for Bachelors and Masters students Each node will host studen...career in mathematical or computational biology at institutions located in its region. Eligibility: Bachelors (3...
3737 days ago
+6 more Opportunity posts

- Gudiya Pal@gudiya
Zhang Lab
We develop and use integrative bioinformatics approaches to extract biological meanings from experimental data and generate hypotheses for experimental validation. Please explore our website to learn more about our people and our research. More at http://bioinfo.vanderbilt.edu/zhanglab/
3408 days ago

- Jitendra Narayan@admin
DNA Transcription (Advanced)
Transcription is the process by which the information in D...nscription factors assemble at a specific promoter region along the DNA. The length of...ind to specific sequences of DNA known as enhancer regions. These regions may be thousa...
3376 days ago

- Aaryan Lokwani@aaryan
Install Perl Locally !
# To follow these instructions, we'll assume your system admins have already installed these essentials: # Debian/U...N::Parse XML::Parser XML::Simple LWP LWP::Simple LWP::Protocol::https Archive::Extrac...
2136 days ago
- Surabhi Chaudhary@surabhi
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequence...eqs)) from Bio import Entrez allseq = {} for x in seqs: if 'gene-region' in x and x['gene-region'] == "complete": nm = x[...
1128 days ago
+56 more Bio-Scripts

- Jit@jit.aber
Comment on "Running Trinity on RNA-seq !"
...expression analysis. Trinity provides direct support for several DE analysis methods, including edgeR, DESeq2, Limma/Voom, and ROTS. Extract coding regions using TransDecoder ...
2115 days ago