Results for "Gene Expression."
Blogs
Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to ana...rn how do they explain their one graph (which they generally produce after one year o.... I have entered problems into search engines that generate no...3947 days ago
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same...ether it encompasses multiple genes, an area containing single g...define synteny as “Two genes which occur on the same chro...ertain evolutionary important genes play an important role in ev...s conservation of large-scale gene order...2607 days ago
- +28 more Blogs
Bookmarks
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3947 days ago
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3942 days ago
- +185 more Bookmarks
Files
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinformatician it is just a magical stick to resolve gingatic string data. We did not find any good and us...3950 days ago
- Liver cancer is third leading cause of deaths and fourth most frequent occuring cancer worldwide. Th...mall RNA molecules known to inhibit mRNA expression of particular gene by binding improperly to 3'UTR region of a gene and he...
3558 days ago
- +2 more Files
Discussion topics
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3942 days ago
Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it...formatics, including sequence analysis,phylogenetics, molecular evolution and population genetics.Bio++ is designed in an e...decomposition, inversion, etc.Random number generation:...3945 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, da...ely high descriptive power. Classes for Multiple alignment (Bio::Alignment), Gene Ontolo...3944 days ago
- +9 more Pages
Top-level pages
- ...the information stored in the genetic code, but also experimenta...3D structure alignment, phylogenetic tree construction, predict...ide polymorphisms to hunt for genetic sources of deseases. Many...lso sequences regulating gene expression. A comparison of the genomes o...
3944 days ago
- Data mining, the extraction of hidden predictive information from large...y, it’s becoming more common to generate reams of data then ask so...ore, people working in bioinformatics generally come from computer scien...s: Tools for Mining and Applying Genetic Inf...
3943 days ago
- +40 more Top-level pages
Wire posts
News
Lateral Gene Transfer Is Enriched in Cancer Samples
There has been always a confusion on cancer and bacteria relationship. This is the first paper which shows lateral gene transfer causes cancer. Find more at http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.10031073937 days ago
R package for visualising GO enrichment
An R package that visualizes the GO enrichment results as word clouds and arranges them together with figures of...ts for analyses such as differential expression or clustering, where for each gene list w...3937 days ago
- +37 more News
Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 labo...ter, is seeking a bioinformatician to analyze Next Generation Sequencing (NGS) data a...between sequence variation, functional variation, gene/protei...3946 days ago
- van Noort Group is looking for PhD fellows We currently access an unprecedented kn...is young computational systems biology group is to generate biological sense from the...will be exploited to better understand two complex genetic tra...
3946 days ago
- +58 more Opportunity posts
ResearchLabs posts
The Institute for Molecular Bioscience (IMB), Bailey Lab
Pattern recognition and computational biology MEME Suite software development; gene expression; mathematical modelling; gene regulation and transcription Specialization: Pattern recognition and modelling in computational biology Link @ http://www.imb.uq.edu.au/tim-bailey3945 days ago
- Statistical functional genomics in experimental medicine The genome projects and the accelerated development of...al backgrounds. Research Area: Linear models for microarray data Digital gene expres...
3945 days ago
- +33 more ResearchLabs posts
Fun
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, n...ak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST k...jayenge Raju ban gaya Genefinder. Har Ligand jo dock ka...BLAST To Hona Hi Tha !! Meri Gene Tumhare Paas Hai Aao Databas...Maine Bhi ClustalW Kiya Hai GeneScan Ka...3916 days ago
- 1. A futuristic computational biology student was told to write "It is in my gene!!!" on the board 100 times as a...$count++) { print "It is in my gene!!!";}I guess, he is gonna to...; $startGene=$1; &n...sked the bartender:CREATE TABLE gene IF NOT...
3698 days ago
Video
How Genes are Regulated: Transcription Factors
...types use it differently. Transcription Factors help influence which genes are used in which cell. Unde...ter understand and model their binding to DNA and their regulation of gene expression. Scientific Direction by the...3892 days ago
DNA is packaged in a chromosome experiment
...lly form a chromosome; this both compacts DNA and creates an added layer of regulatory control, which ensures correct gene expression. Nucleosomes are thought to carry epigenetically inherited information in the...3874 days ago
- +10 more Video
Bio-Scripts
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.or...en(seqs)) from Bio import Entrez allseq = {} for x in seqs: if 'gene-region' in x and x['gene-region...1133 days ago
Read lines from input file – print lines that match a regular expression
#!/usr/bin/perl use strict; use warnings; my $line; #read the line-by-line for each line ask if it matches the regex print it if it matches while($line = ){...2914 days ago
- +18 more Bio-Scripts
Polls
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a programming language which is compatible with most bioinformatics tools or software. I ba...3528 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute at T...it based on this profile. Alterations in the gene, transcript, protein, and met...ou will be retired, what would you tell next generation...2359 days ago
Groups
Our research interest falls in the broad field of bioinformatics and, more specifically into Computational...CGH (Comparative Genomic Hybridization) microarrays Computational genetics Candidate gene priori...3940 days ago
This group is being designed to cover some of the common algorithms underlying the following fundamen...ssembling genomes, comparing DNA and protein sequences, predicting genes, finding regulatory motifs, analyzing gene expres...3899 days ago
Tags
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 laboratories of the Paris-Saclay Scientific Cluster, is seeking a bioinformatician to analyze Next Generation Sequencing (NGS) data analysis. In the context of a flagship project aiming at understanding and improving...Tags: Bioinformatics, NGS, Paris, Genotype, Gene Expression.
3946 days ago
Comments
Comment on "Tools for Differential expression analysis"
...is of RNA-Seq data. It uses a generalized linear model to model...and testing for differential expression. limma: A popular R packa...s a linear model to model the gene expression data and provides methods...and testing for differential expression. DEGSeq: This R package i...418 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Genome synteny analysis is the comparison of the genomic structure and gene content of two or more related species. Here are some general steps to follow for conduc...se, such as NCBI or Ensembl. Gene annotation: Annotate the gene...nder or OrthoMCL. Orthologous genes are genes that are homologou...420 days ago
- +3 more Comments
