Results for "Gene expression"
Users
Interests: Gene Expression Analysis3720 days ago
- Interests: gene expression regulation
1512 days ago
Blogs
Five unique traits of effective computational biologist
...bad biological programmer learn Perl's regular expression when they started a pro...ow do they explain their one graph (which they generally produce after one year o...have entered problems into search engines that generate no results, and every question...3944 days ago
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same...ether it encompasses multiple genes, an area containing single g...define synteny as “Two genes which occur on the same chro...ertain evolutionary important genes play an important role in ev...s conservation of large-scale gene order...2604 days ago
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Bookmarks
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3944 days ago
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3939 days ago
- +185 more Bookmarks
Files
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinfor...did not find any good and user friendly regular expression cheat sheet, hence write our own cheat sheet. The Regular Expressions Cheat Sheet, a quick referen...3947 days ago
- ...MiRNA is small RNA molecules known to inhibit mRNA expression of particular gene by binding improperly to 3'UTR region of a gene and hence block binding of TF /tran...this region become hyper-methylated thats prevent expression of host gene. Thus , integrat...
3555 days ago
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Discussion topics
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3939 days ago
Pages
Bio++ : C Language libraries for your biological need
...erse, concise manner in which powerful expressions can be coded. C was wi...tics, including sequence analysis,phylogenetics, molecular evolution and population genetics.Bio++ is designed in an e...position, inversion, etc.Random number generation: Quick & Dirty (32bits on...3942 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, dat...mely high descriptive power. Classes for Multiple alignment (Bio::Alignment), Gene Ontol...3941 days ago
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Top-level pages
- ...al genomics experiments (e.g. expression data, yeast two–h...3D structure alignment, phylogenetic tree construction, prediction an...ide polymorphisms to hunt for genetic sources of deseases. Many compl...lso sequences regulating gene expression. A comparison of the genomes...
3941 days ago
- ...t’s becoming more common to generate reams of data then ask so...people working in bioinformatics generally come from computer scien...bsp;Tools for Mining and Applying Genetic Information in Patient Car...pdf Towards knowledge-based gene expression data mining: http://www....
3940 days ago
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Wire posts
News
Lateral Gene Transfer Is Enriched in Cancer Samples
There has been always a confusion on cancer and bacteria relationship. This is the first paper which shows lateral gene transfer causes cancer. Find more at http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.10031073934 days ago
R package for visualising GO enrichment
...ether with figures of experimental data. This allows us to draw informative summary plots for analyses such as differential expression or clustering, where for each gene list we display its behaviour in th...3934 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
...y Scientific Cluster, is seeking a bioinformatician to analyze Next Generation Sequencing (NGS) data a...establish a link between sequence variation, functional variation, gene/protein expression and phenotypic adaptation....3943 days ago
- van Noort Group is looking for PhD fellows We currently access an unprecedented kno...his young computational systems biology group is to generate biological sense from the...will be exploited to better understand two complex genetic tr...
3943 days ago
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ResearchLabs posts
The Institute for Molecular Bioscience (IMB), Bailey Lab
Pattern recognition and computational biology MEME Suite software development; gene expression; mathematical modelling; gene regulation and transcription Specialization: Pattern recognition and modelling in computational biology Link @ http://www.imb.uq.edu.au/tim-bailey3942 days ago
- ...uires the marriage of researchers from mathematical and biological backgrounds. Research Area: Linear models for microarray data Digital gene expression technologies Detection of mo...
3942 days ago
- +33 more ResearchLabs posts
Fun
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, n...ak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST k...jayenge Raju ban gaya Genefinder. Har Ligand jo dock ka...BLAST To Hona Hi Tha !! Meri Gene Tumhare Paas Hai Aao Databas...Maine Bhi ClustalW Kiya Hai GeneScan K...3913 days ago
- 1. A futuristic computational biology student was told to write "It is in my gene!!!" on the board 100 times as a...$count++) { print "It is in my gene!!!";}I guess, he is gonna to...; $startGene=$1; &n...sked the bartender:CREATE TABLE gene IF NO...
3695 days ago
Video
How Genes are Regulated: Transcription Factors
...types use it differently. Transcription Factors help influence which genes are used in which cell. Unde...ter understand and model their binding to DNA and their regulation of gene expression. Scientific Direction by the...3889 days ago
DNA is packaged in a chromosome experiment
...lly form a chromosome; this both compacts DNA and creates an added layer of regulatory control, which ensures correct gene expression. Nucleosomes are thought to carry epigenetically inherited information in the...3871 days ago
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Bio-Scripts
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.or...en(seqs)) from Bio import Entrez allseq = {} for x in seqs: if 'gene-region' in x and x['gene-regio...1130 days ago
Read lines from input file – print lines that match a regular expression
#!/usr/bin/perl use strict; use warnings; my $line; #read the line-by-line for each line ask if it matches the regex print it if it matches while($line = ){...2911 days ago
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Polls
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a pr...software. I basically want to do de-novo assembly, map reads, align reads, and expression analysis. Recommendations wel...3525 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute at T...it based on this profile. Alterations in the gene, transcript, protein, and met...ou will be retired, what would you tell next generation...2356 days ago
Groups
Our research interest falls in the broad field of bioinformatics and, more specifically into Computational...CGH (Comparative Genomic Hybridization) microarrays Computational genetics Candidate gene prior...3937 days ago
...the following fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein sequences, predicting genes, finding regulatory motifs, analyzing gene expression, constructing evolutionary tr...3896 days ago
Tags
A powerful, yet simple, gene set analysis tool for interpreting RNA-seq and NGS results.
LifeMap Sciences is introducing GeneAnalytics, our new gene set analysis tool, which is applicable for NGS results and differentially expressed gene lists from variable sources. GeneAnalytics provides gene associations with tissues & cells, diseases, pathways, GO terms and compounds...Tags: Analysis tool, RNA sequencing, NGS, gene expression, functional analysis
3469 days ago
- GenXPro GMbH is service provider for entire spectrum of nucleotide-based information of any biological sample. By combining intelligent data reduction techniques and latest next generation sequencing technologies, our service portfolio provides most accurate and cost efficient solu...
Tags: Sequencing, DNA-Seq, RNA-Seq, MACE, Epigenetics, microRNA, Chip-Seq, RAD-Seq, Methylation-Seq, transcriptomics, GBS, Gene expression, de-novo assembly, breeding, Exome Seq, Rare variants
3630 days ago
Comments
Comment on "Tools for Differential expression analysis"
...and testing for differential expression. edgeR: Another R packag...is of RNA-Seq data. It uses a generalized linear model to model the co...s a linear model to model the gene expression data and provides methods for...ls available for differential expression analysis. The choice of tool...415 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...of the genomic structure and gene content of two or more related species. Here are some general steps to follow for conduc...of genomic data, such as gene expression or functional analysis....standing of genome structure, gene content, and evolutionary relations...417 days ago
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