3727 days ago
1519 days ago
Five unique traits of effective computational biologist
...bad biological programmer learn Perl's regular expression when they started a pro...ow do they explain their one graph (which they generally produce after one year o...have entered problems into search engines that generate no results, and every question...3951 days ago
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same...ether it encompasses multiple genes, an area containing single g...define synteny as “Two genes which occur on the same chro...ertain evolutionary important genes play an important role in ev...s conservation of large-scale gene order...2611 days ago
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3950 days ago
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3946 days ago
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinfor...did not find any good and user friendly regular expression cheat sheet, hence write our own cheat sheet. The Regular Expressions Cheat Sheet, a quick referen...3953 days ago
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Bio++ : C Language libraries for your biological need
...erse, concise manner in which powerful expressions can be coded. C was wi...tics, including sequence analysis,phylogenetics, molecular evolution and population genetics.Bio++ is designed in an e...position, inversion, etc.Random number generation: Quick & Dirty (32bits on...3948 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, dat...mely high descriptive power. Classes for Multiple alignment (Bio::Alignment), Gene Ontol...3948 days ago
3948 days ago
3947 days ago
Lateral Gene Transfer Is Enriched in Cancer Samples
There has been always a confusion on cancer and bacteria relationship. This is the first paper which shows lateral gene transfer causes cancer. Find more at http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.10031073941 days ago
R package for visualising GO enrichment
...ether with figures of experimental data. This allows us to draw informative summary plots for analyses such as differential expression or clustering, where for each gene list we display its behaviour in th...3940 days ago
Structural polymorphism analysis from NGS data
...y Scientific Cluster, is seeking a bioinformatician to analyze Next Generation Sequencing (NGS) data a...establish a link between sequence variation, functional variation, gene/protein expression and phenotypic adaptation....3949 days ago
3949 days ago
The Institute for Molecular Bioscience (IMB), Bailey Lab
Pattern recognition and computational biology MEME Suite software development; gene expression; mathematical modelling; gene regulation and transcription Specialization: Pattern recognition and modelling in computational biology Link @ http://www.imb.uq.edu.au/tim-bailey3948 days ago
3948 days ago
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, n...ak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST k...jayenge Raju ban gaya Genefinder. Har Ligand jo dock ka...BLAST To Hona Hi Tha !! Meri Gene Tumhare Paas Hai Aao Databas...Maine Bhi ClustalW Kiya Hai GeneScan K...3919 days ago
3702 days ago
How Genes are Regulated: Transcription Factors
...types use it differently. Transcription Factors help influence which genes are used in which cell. Unde...ter understand and model their binding to DNA and their regulation of gene expression. Scientific Direction by the...3895 days ago
DNA is packaged in a chromosome experiment
...lly form a chromosome; this both compacts DNA and creates an added layer of regulatory control, which ensures correct gene expression. Nucleosomes are thought to carry epigenetically inherited information in the...3877 days ago
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.or...en(seqs)) from Bio import Entrez allseq = {} for x in seqs: if 'gene-region' in x and x['gene-regio...1137 days ago
Read lines from input file – print lines that match a regular expression
#!/usr/bin/perl use strict; use warnings; my $line; #read the line-by-line for each line ask if it matches the regex print it if it matches while($line = ){...2917 days ago
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a pr...software. I basically want to do de-novo assembly, map reads, align reads, and expression analysis. Recommendations wel...3531 days ago
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute at T...it based on this profile. Alterations in the gene, transcript, protein, and met...ou will be retired, what would you tell next generation...2362 days ago
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Comment on "Tools for Differential expression analysis"
...and testing for differential expression. edgeR: Another R packag...is of RNA-Seq data. It uses a generalized linear model to model the co...s a linear model to model the gene expression data and provides methods for...ls available for differential expression analysis. The choice of tool...421 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...of the genomic structure and gene content of two or more related species. Here are some general steps to follow for conduc...of genomic data, such as gene expression or functional analysis....standing of genome structure, gene content, and evolutionary relations...424 days ago