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Tools to detect synteny blocks regions among multiple genomes
...flipped around on the respective genomes. Ovcharenko et. al. define it...ch of the two species) on several genomes. Figure: Image generated w...regions syntenic across multiple genomes and measuring the extent of g...nteny regions between two or more genomes and interactively visualize t...2612 days ago
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Sequencing Solutions to World Health
"New technology that quickly, easily and economically reveals the genomes of viruses and pathogens transforms public health and medicine." Source: Life technologies3904 days ago
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Evaluation of genome assembly software based on long reads
...e de novo assemblies of hundreds of microbial genomes and highly contiguous reconstructions of many dozens of plant and animal genomes, enabling new insights into e...rimentation has been performed on 4 reference genomes and the results evaluated wit...1922 days ago
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Genome Assembly Tools and Software - PART2 !!
...reported for the assembly of genomes while the others are designed aiming at handling complex genomes. RMAP 2.1 – Short-re...nsisting of individuals viral genomes (also known as quasi-species)...y and annotation of microbial genomes from high-throughput sequence...2687 days ago
Awesome perl frameworks, libraries and software - PART 4
...eive Images From Eye-Fi Cards kirei/fpdns - Net::DNS::Fingerprint gjospin/PhyloSift - Phylogenetic and taxonomic analysis for genomes and metagenomes chrispix/symbolicatecrash-fi...2496 days ago
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100K Foodborne Pathogen Genome Project
...anisms to its public database at the National Center for Biotechnology Information. 100K Genome Project, aims to sequence the genomes of 100,000 bacterial and viral genomes. http://100kgenome.vetmed.uc...3925 days ago
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Structural polymorphism analysis from NGS data
...cluding structural variants, of the comparison of multiple and diverse genomes of a same species and of the construction of pan- and core-genomes. These challenging tasks will...3950 days ago
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The Best Bioinformatics / Computational Biology Quotes
...he genetic code :P If at first you don't succeed; call it version 1.0 The glass is neither half-full nor half-empty: it's actually have several genomes. I'm BioGeek. Fedup with LI...3722 days ago
Bioinformatics -- Understanding of living systems through information science
...anchors can be thought of as words. Q. We're coming to understand the genomes of various organisms - not ju...on. The first method used to analyze a genome is comparing it with the genomes of other organisms, to see wh...3919 days ago
Translational Bioinformatics: Transforming 300 Billion Points of Data
...nts to find new uses for drugs, discovering new treatable mechanisms of disease in type 2 diabetes, and evaluating patients presenting with whole genomes sequenced. The NIH Wednesda...3912 days ago
Download the genome from NCBI using bash script/command
...curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/fungi/assembly_summary...-r 's|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_geno...curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/assembly_summary...-r 's|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_geno...2534 days ago
Download the gff files from NCBI using bash script/command
...curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/fungi/assembly_summary...-r 's|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_geno...curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/assembly_summary...-r 's|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_geno...2525 days ago
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Comment on "Short-read assembly using Spades !"
...be done using tools such as QUAST or BUSCO. These tools assess the completeness and accuracy of the assembled genome by comparing it to reference genomes or sets of conserved genes....417 days ago
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