Installing docker for Bioinformatics on Ubuntu !
...o containerd runc Reading package lists... Done Building dependency...bionic stable" > /etc/apt/sources.list.d/docker.list + sudo -E sh -...Enable debug mode -H, --host list Daemon socket(s) to...history of an image images List images import Import...1507 days ago
Pack a perl program with their dependencies on Ubuntu !
...s/autoConTAMPR/bin$ sudo apt install libpar-packer-perl Reading package lists... Done Building dependency...ou-should-switch-from-windows-to-linux-right-... Jit@jit.aber List of perl special symbols !By J...1505 days ago
Commands to install conda in Ubuntu !
...tributions of source code must retain the above copyright notice, this list of conditions and the followi...butions in binary form must reproduce the above copyright notice, th is list of conditions and the followi...1505 days ago
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Command to create conda environment !
# using pip pip install -r requirements.txt # using Conda conda create --name --file requirements.txt #Using yaml conda env create -f environment.yml #Listing env conda env list #Create env with python36 conda create -n myenv python=3.61193 days ago
Steps to install Conda on Linux !
...nux-x86_64.sh #Follow the yes/no flags and finish till the end #Check the installation $ conda -V A few other frequently used commands # list all the conda environment ava...1176 days ago
Commandline to Extract a list of specific read IDs from a bam file
#Save all the IDs in IDs.txt file #Run it on BAM file samtools view file.bam | fgrep -w -f IDs.txt989 days ago
List of string comparison algorithms !
String comparison: Levenshtein Distance Damerau-Levenshtein Distance Jaro Distance Jaro-Winkler Distance Match Rating Approach Comparison Hamming Distance More at https://jellyfish.readthedocs.io/en/latest/comparison.html975 days ago
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