Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to anal...r to interact with biotech researchers and learn how do they explain their one graph (which they generally produce...3945 days ago
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge am...at you need in your analysis is already coded into the program. Need to plot a graph? Just click this button right...3702 days ago
InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
InfoGenomeR is the Integrative Framework for Genome Reconstruction that uses a breakpoint graph to model the connectivity amo...type information to identify the optimal breakpoint graph representing cancer genomes....1091 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and...e data into many individual de Bruijn graphs, each representing the trans...ene or locus, and then processes each graph independently to extract full...ers and constructs complete de Bruijn graphs for each cluster. Each clust...2960 days ago
R Graphical Cookbook by Winston Chang
R Graphical Cookbook by Winston Chang A very nice book by Winston Chang for R ethusiast. The R code presented in th...roduce the figure is included. This means that there is sometimes considerable overlap...2149 days ago
Prepare for Coding Interview !
This is a comprehensive guide to prepare for your next coding interview. It's great fo...view_experience_at_google/ #bottom-comments. 1. Data structures 2. Trees and Graph algorithms 3. Dynamic Progra...839 days ago
Genome Assembly Tools and Software - PART2 !!
...ories: string-based model and graph-based model. We therefore list...scovery. SAGE – String Graph Assembly of GEnomesSAGE is a new string-overlap graph-based de novo genome as...to obtain all sequences that overlaps, directly or indirectly, w...2680 days ago
Awesome perl frameworks, libraries and software - PART 2
licheng/gccfilter - gccfilter is a per...l-GD - Perl GD module for bitmap graphics keiya/KeiSpade-CMS -...n terms of AnyEvent agentzh/makefile-graphviz-pm - Perl CPAN module...nbsp;- MySQL stats logging for Statsd/Graphite naoya/hadoop-streaming-fr...2489 days ago
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BEReX : Biomedical Entity-Relation eXplorer
BEReX is a new biomedical knowledge integration, search, and exploration tool. BEReX i...keywords and BEReX returns a sub-network matching the keywords. The resulting graph can be explored interactively...3834 days ago
3541 days ago
Post-doc position at LABGeM - Evry, France
The LABGeM team (CEA/Genoscope, CNRS UMR 8030, France, Dir. Claudine Médigue) is devel...nd enzyme families. These methods will be based on protein family analysis and graph approaches combining genomic...3062 days ago
11th International Joint Conference on Biomedical Engineering Systems and Technologies
BIOSTEC, the 11th International Joint Conference on Biomedical Engineering Systems and...systems biology, sequence analysis, biostatistics, image analysis, network and graph models, scientific data manag...2644 days ago
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Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive Data A...algorithms. We show how ideas from cutting-edge algorithms, including spectral graph theory and modern data struct...3896 days ago
2259 days ago
Estimate Genome Size with Jellyfish and R
jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? /common/Tutorial/Genome_estimation/sample_read_1.fastq /common/Tutorial/Genome_estimation/sample_rea...2240 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
urbe@urbo214b[genome] graphmap align -h []GraphMap - A very accurate and sensit...SAM output (in normal and '-w overlap' modes). m5 - BLASR M5 form...w normal -M 5 -X 4 -G 8 -E 6' overlap - Equivalent to: '-a anchor...Algorithmic options: -k INT Graph construction kmer size. [6] -...2287 days ago
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