1139 days ago
Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to analyse...In other concrete term, the bad biological programmer learn Perl's regular expression when they started a project o...3949 days ago
List of gene ontology software and tools
The Gene Ontology (GO) is a set of associations from biological phrases to specific genes...logy (GO) terms in a list of microarray probe sets or gene identifiers (with expression information for PAGE analysis...3709 days ago
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3949 days ago
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3944 days ago
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinfor...did not find any good and user friendly regular expression cheat sheet, hence write our own cheat sheet. The Regular Expressions Cheat Sheet, a quick referen...3952 days ago
3560 days ago
3944 days ago
3920 days ago
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of s...mble transcripts and estimate their expression levels from RNA-Seq reads. C...Transcriptome Assembly and Isoform Expression Level Estimation from Biased...genome, across a broad spectrum of expression values and in presence of alt...2685 days ago
3946 days ago
3945 days ago
R package for visualising GO enrichment
...louds and arranges them together with figures of experimental data. This allows us to draw informative summary plots for analyses such as differential expression or clustering, where for each...3939 days ago
Chromatin: From nucleosomes to chromosomes, 30 April - 2 May 2014
EMBL-EBI announced the Wellcome Trust Scientific Conference Chromatin: From nucleosomes t...opments in understanding chromatin structure and function, particularly gene expression and genome integrity.This mee...3924 days ago
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 laborato...ablish a link between sequence variation, functional variation, gene/protein expression and phenotypic adaptation....3948 days ago
Postdoctoral position in bioinformatics @ Sweden
Information about the department The Department of Mathematical Sciences at Chalmers Uni...t generation DNA sequencing, in particular comparative metagenomics and gene expression analysis (RNA-seq). We have s...3947 days ago
The Institute for Molecular Bioscience (IMB), Bailey Lab
Pattern recognition and computational biology MEME Suite software development; gene expression; mathematical modelling; gene regulation and transcription Specialization: Pattern recognition and modelling in computational biology Link @ http://www.imb.uq.edu.au/tim-bailey3947 days ago
3947 days ago
May 17, 2013 - Differential Network Analysis
Steve Horvath presents Differential Network Analysis at the UCLA Human Genetics/Biostatistics Network Course3895 days ago
How Genes are Regulated: Transcription Factors
Each cell in our body inherits the same master copy of DNA, but different cell types use...etter understand and model their binding to DNA and their regulation of gene expression. Scientific Direction by the...3894 days ago
Read lines from input file – print lines that match a regular expression
#!/usr/bin/perl use strict; use warnings; my $line; #read the line-by-line for each line ask if it matches the regex print it if it matches while($line = ){...2916 days ago
Perl script to find coding regions in DNA sequences
#!/usr/bin/perl -w use strict; # if the number of inp...extract the two values or columns with a regular expression # A group of letters and a...quence in segments of length # three, a regular expression will be used searching for al...2154 days ago
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a programm...ftware. I basically want to do de-novo assembly, map reads, align reads, and expression analysis. Recommendations wel...3530 days ago
3901 days ago
Comment on "Tools for Differential expression analysis"
Differential expression analysis is a widely used techn...ools available for performing differential expression analysis, including: DESeq...ting variance and testing for differential expression. edgeR: Another R packag...420 days ago
Comment on "Running Trinity on RNA-seq !"
.... This is a prerequisite to many other analyses such as examining differentially expressed transcripts among...account for them in your further data explorations. Perform differential expression analysis. Trinity provides di...2122 days ago