Results for "error correction"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several...installed, application will display the following error message. In this example, XML...ure the cpan command is working. Following are the error mess...3961 days ago
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge am...o you are responsible for troubleshooting your own errors most of the time. We co...B/TB of data are having maximum chances of getting errors, so...3719 days ago
- +19 more Blogs
Bookmarks
- ...he. But thier sequence format is different, also they have different error type. High quality data is ve...eporting reads quality statistical details, trimming, filtering, and error correction. Please bookmarks them for th...
3245 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap is a novel mapper targeted at aligning long, error-prone third-generation sequencing data.It is&n...sp;can handle a wide range of read lengths and error profiles, including: Ill...y important feature for technologies where the error rate...3236 days ago
- +74 more Bookmarks
Files
- DOWNLOAD LINK: https://github.com/BioInf-Wuerzburg/proovread/raw/master/util/blasr-1.3.1/blasr I'm running "OPERA-LG_v2.0.5/bin/preprocess_reads.pl" and have the following error: fa...
2162 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...Editor 1.20 – Automated Correction of Genome Sequence ErrorsAutoEditor is a tool for...g. It also provides tools for error correction, sequence-to-read alignment a...Quake adopts the k-mer error correction framework, first introduced b...2697 days ago
Top-level pages
- Data mining, the extraction of hidden predictive information from large databases. Data mining is becoming an inc...Regression - Attempts to find a function which models the data with the least error. As...
3957 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ty assessment, filtering, and correction SolexaQA: At-a-glance q...: quality-aware detection and correction of sequencing errors. Kelley et al, Genome Biol 1...ral Correction of sequencing errors in a mixed set of reads. Salmela,...ting or are simply sequencing errors - the authors stand by their conc...3790 days ago
- +14 more Top-level pages
Wire posts
News
- DST-SERB Winter School on Computational Chemistry (WSCC – 2013)December 9-13,...or hyper-GGA methods; beyond static DFT; Beyond LDA and GGA; Self-interaction correction; Dispersion corrected functio...
3841 days ago
Update Genome Workbench 2.7.15 released
NCBI Genome Workbench is an integrated application for viewing and analyzing sequence...ialog to give better diagnostics in case of a user error Graphical Sequence View: PDF...genetic Tree Builder Tool: improved diagnostics of errors Mu...3732 days ago
- +3 more News
ResearchLabs posts
- Gupta laboratory of Natural Information Processing at DA-IICT. Research in our lab currently focuses on two aspec...nd making a computer out of bio-molecules. The key expertise of the lab is in error-corr...
3896 days ago
Fun
Golden Rules of Bioinformatics
All constant are variable. Copy and paste is a genetic error. First solve the problem, then write the code. No matter what goes wrong, it will probably look right. Any simple pro...3927 days ago
The Best Bioinformatics / Computational Biology Quotes
Bioinformatician are not anti-social; We are just genome friendly. Bioinformatician would love to change the b...script. Idiot, Go ahead, make my data! Thank god, my genome just compiled. Error mess...3731 days ago
- +1 more Fun
Bio-Scripts
Perl script to count the number of Adenine, Thymine, Guanine and Cytosine in your DNA Sequence
#!/usr/local/bin/perl -w # While executing this script it asks for the file name of...nt_of_C = 0; $count_of_G = 0; $count_of_T = 0; $errors = 0; foreach $base (@DN...++$count_of_G; } else { print "Error - Un...2927 days ago
Retrieve NCBI GenBank records with a range of accession numbers
#!/usr/bin/perl #FILE: ncbi_search.pl #AUTH: Paul Stothard (paul.stothard@gmail.co...m/(.*)/is) { die("ESearch returned an error: $1"); } me...TFILE, ">" . $param{outputFile} ) or die("Error: Can...2927 days ago
- +31 more Bio-Scripts
Tags
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single molecula sequencing (SMRT) reads. MECAT employs novel alignment and error correction algorithms that are much more efficient than the state of art of aligners and error correction tools. MECAT can be used for e...Tags: MECAT, fast mapping, error correction, de novo, assembly, genome, single-molecule, sequencing, reads, Tools
2197 days ago
Comments
Comment on "Short-read assembly using Spades !"
...a genome browser. SPAdes also provides several options for tuning the assembly parameters, such as adjusting the k-mer length or enabling error correction. The SPAdes manual provides d...432 days ago
Comment on "Sibelia: A comparative genomics tool"
...some free space on HDD to run. If you experience any problems and see error messages that mention tempora...rresponds to blocks obtained without any simplification. Boundaries correction --------------------- Algor...1296 days ago
