Results for "genome structure"
Blogs
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge amounts of data and try to mak...type of analysis that you are doing. This is particularly true in the case of genome as...3721 days ago
- In comparative genome analysis work, we usually compare more than two genomes and looks for syntenic regions amongst them. In my research I used...ect designed to provide a visual means for simultaneously comparing genomes o...
3953 days ago
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Bookmarks
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3959 days ago
- Bioinformatics is developing very rapidly. With new tools and software it is, now a day...g fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein s...ession, constructing evolutionary trees, analyzing genome re...
3958 days ago
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Files
Master Thesis: Trans-membrane topology prediction through Markov based decoders
Abstract: Background/Motivation: The dearth of structural information on alpha he...ials that can be used for automatic prediction of trans-membrane (TM) protein structure. While algorithm for identifi...3958 days ago
- Some fish kidnaped a bioinformatician for their genome analysis.
3866 days ago
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Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages....3965 days ago
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3958 days ago
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Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it allow...ty test (Bowker's test).etc. Phylogenetics and molecular evolution Data structure and IO Phylogenetic trees.IO...3961 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, data...or the Ruby language. This project is supported by University of Tokyo (Human Genome Ce...3961 days ago
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Top-level pages
- The completion of the first human genome drafts was just a start of the modern DNA sequenc...ration sequencing” (HT-NGS). The decreasing genome sequencing cost and desire to...ogically suitable language to handle ever growing genome or...
3961 days ago
- ...tion of a protein. Protein 3D structures are stored in specific datab...s DataBase for the C. elegans genome, FLYBASE for D. melanogaster etc...tion. The increased speed of structure determination necessary for t...lds can be analysed for whole genomes. Protein–protein interact...
3961 days ago
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Wire posts
News
- "Ludovic Orlando and Eske Willerslev , Centre for GeoGenetics have beaten sequencing of t...y.htm http://geogenetics.ku.dk/latest-news/a-700.000-year-old-horse-gets-its-genome-se...
3825 days ago
UK Genome Science Meeting, sept 2nd-4th, 2013
Following the success of the last three years' UK Next Gen Sequencing meetings at Nottingham, the newly named UK Genome Sc...3932 days ago
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Opportunity posts
Livestock Functional Genomics Summer School (LFG 2013)
*Livestock Functional Genomics Summer School - Call for applications* 1st Livestock Functional Genomics Summer...k big molecular data, and be able to manipulate high density genotypes, whole genome se...3942 days ago
2013 NextGen Genomics & Bioinformatics Technologies (NGBT) Conference, New Delhi, INDIA
2013 NextGen Genomics & Bioinformatics Technologies (NGBT) Conference SciGenom R...In the ten years since the first human reference genome was completed for US$3 billio...great reduction in sequencing cost. Today a human genome ca...3936 days ago
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ResearchLabs posts
- The human genome project and similar projects in disease-causing organisms such as Plasmodium falciparum, which ca...quence data in cancer Methods for analysis of structural variation in cancer genomes...
3961 days ago
- Statistical functional genomics in experimental medicine The genome projects and the accelerated development of high-throughput genomic technologies such as microarrays have revolution...
3961 days ago
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Fun
Bioinformatician become producer/director !!!
...LAST : Eak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST kiya. NCBI...cian No.1 Mera Naam Tool Developer Hum Apke Genome Mein Rehte Hein Do Seq...Desh Mein Day Hoff Rehta Hai PDB Ek Numbari Structure Dus Numbari GCG Karo Sajana...3932 days ago
What a bioinformatician always dream for ???
Well established bioinformatics labs with SGI(silicon graphics interface) License of all commercial softwares. Complete, and fully assembled genome of...3858 days ago
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Video
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome Project, aiming to decode all...e life. One is example is the genome. In all organisms, DNA contai...ation, and this is called the genome. But the amount of informatio...erved between species. If the genome is considered as a long text,...3930 days ago
Translational Bioinformatics: Transforming 300 Billion Points of Data
Translational Bioinformatics: Transforming 300 Billion Points of Data into Diagnostics,...Description: There is an urgent need to translate genome-era discoveries into clinical...tes, and evaluating patients presenting with whole genomes s...3924 days ago
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Bio-Scripts
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ has more (1200?), but they require you to sign up import...1149 days ago
Download genome using NCBI esearch command line !
#Download using command line "NC_005956.1" / "CP003784.1" esearch -db nucleotide -query "NC_005956.1" | efetch -format fasta > seq1.fa esearch -db nucleotide -query...1115 days ago
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Polls
Which of the followings are the best place to study Bioinformatics ?
Bioinformatics is a major growth area and qualified Bioinformaticians are in high demand. An explosion in biological data has resulted from genome pr...3430 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...403)) is, applying a bioinformatics-supported genome, transcriptome, proteome, and...ithin the scope of the project. The molecular structures involved in the development...another pipeline for prokaryotic TCS protein structure prediction and inhibitor desi...2375 days ago
Groups
INTIMATE secrets hidden in your DNA could be stolen without you even realising...ing a glass from which you have drunk, a "genome hacker" could obtain a comprehensive scan of your genome, revealing DNA variants that...t or bioinformatician you hack the entire genome to...3966 days ago
Our research interest falls in the broad field of bioinformatics and, more specifically...ng for motif finding Biclustering algorithms Genome Assembly Developement of n...mbly procedure Comparative genomics approaches in genome as...3956 days ago
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Tags
- Plant scientists can exploit available 50 plant complete genomic data for their resequencing or other related projects for understanding the genetic mechanism behind their different traits and molecular evolution. Complete information about these plant genomes given in paper link. https://www.cr...
Tags: plant genome, sequencing, functional genomics, plant evolution, genome structure
3862 days ago
Comments
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Genome synteny analysis is the comparison of the genomic structure and gene content of two or...logical interest. Obtain the genome sequences: Download the genom...unctional analysis. Overall, genome synteny analysis is a complex pr...rough understanding of genome structure, gene content, and evolutiona...437 days ago
Comment on "Running Trinity on RNA-seq !"
...anscripts using Trinotate. If your organism has an assembled genome, consider using the Trinity transcriptome assemblies for gene structure annotation using PASA....2136 days ago
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