Results for "genomes"
Users
About me: ...line, and algorithms to harness the huge amount of biological data (genomes, epigenomes, transcriptomes, proteomes, e...fication-and-analysis-of-evolutionary-breakpoint-regions-in-amniote-genomes(57ec9f04-1029-4f53-a757-c63b7...2 days ago
- About me: ...lummeted with the help of new medical instruments: almost every 6 months we see new instrument with higher throughput like BGI’s DNBSEQ-T7 at 60 genomes per day. At the world’s rate...
652 days ago
Blogs
- ...In comparative genome analysis work, we usually compare more than two genomes and looks for syntenic region...roject designed to provide a visual means for simultaneously comparing genomes of multiple amniote species....
3932 days ago
Tools to detect synteny blocks regions among multiple genomes
...flipped around on the respective genomes. Ovcharenko et. al. define it...ch of the two species) on several genomes. Figure: Image generated w...regions syntenic across multiple genomes and measuring the extent of g...nteny regions between two or more genomes and interactively visualize t...2602 days ago
- +19 more Blogs
Bookmarks
- ...s really interesting where they are covering the common algorithms underlying the following fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein se...
3937 days ago
Sequencing Solutions to World Health
"New technology that quickly, easily and economically reveals the genomes of viruses and pathogens transforms public health and medicine." Source: Life technologies3894 days ago
- +267 more Bookmarks
Files
- 1000 Genomes data tutorial at ASHG Structural variants presentation by Jan Korbel European Molecular Biology Laboratory (EMBL) Heidelberg Genome Biology Research Unit Reference: https://www.genome.gov/pages/research/der/1000genomesprojecttutorials/structuralvariants-jankorbel.pdf
2789 days ago
Evaluation of genome assembly software based on long reads
...e de novo assemblies of hundreds of microbial genomes and highly contiguous reconstructions of many dozens of plant and animal genomes, enabling new insights into e...rimentation has been performed on 4 reference genomes and the results evaluated wit...1912 days ago
Discussion topics
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3937 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...reported for the assembly of genomes while the others are designed aiming at handling complex genomes. RMAP 2.1 – Short-re...nsisting of individuals viral genomes (also known as quasi-species)...y and annotation of microbial genomes from high-throughput sequence...2678 days ago
Awesome perl frameworks, libraries and software - PART 4
...eive Images From Eye-Fi Cards kirei/fpdns - Net::DNS::Fingerprint gjospin/PhyloSift - Phylogenetic and taxonomic analysis for genomes and metagenomes chrispix/symbolicatecrash-fi...2486 days ago
Top-level pages
- ...creation of extensive electronic databases on genomes and protein sequences, and te...ctional annotation in the comparison of whole genomes. Several methods detect glyco...r genetic sources of deseases. Many complete genomes of microorganisms and a few o...
3939 days ago
- ...first sequenced the complete genomes of a virus and a mitochondrio...concerned with sequencing the genomes of various organisms, but the...on material available on Net Genomes and genomics: Bioinformatics...m for rapidly aligning entire genomes, whether in complete or draft...
3934 days ago
- +24 more Top-level pages
Wire posts
News
100K Foodborne Pathogen Genome Project
...anisms to its public database at the National Center for Biotechnology Information. 100K Genome Project, aims to sequence the genomes of 100,000 bacterial and viral genomes. http://100kgenome.vetmed.uc...3915 days ago
- ...hylogenetic trees. The automated pipeline used to reconstruct trees aims at providing a high-quality phylogenetic analysis of different genomes , including Maximum Likelihoo...
3911 days ago
- +21 more News
Opportunity posts
Structural polymorphism analysis from NGS data
...cluding structural variants, of the comparison of multiple and diverse genomes of a same species and of the construction of pan- and core-genomes. These challenging tasks will...3941 days ago
- ...rimental evolution will be correlated with phenotypes. The first challenge in the project will be to identify which of the many variants in these genomes have functional effects. Then...
3941 days ago
- +15 more Opportunity posts
ResearchLabs posts
- ...in human disease. Research Area: Analysis of Next Generation sequence data in cancer Methods for analysis of structural variation in cancer genomes Next Generation sequencing i...
3940 days ago
- ...ence. DNA-, RNA- and ChIP-Seq and their applications to gene expression regulation: statistical and computational foundations. Cancer genomics, genomes as biomarkers, cancer phyloge...
3883 days ago
- +14 more ResearchLabs posts
Fun
The Best Bioinformatics / Computational Biology Quotes
...he genetic code :P If at first you don't succeed; call it version 1.0 The glass is neither half-full nor half-empty: it's actually have several genomes. I'm BioGeek. Fedup with LI...3712 days ago
Video
Bioinformatics -- Understanding of living systems through information science
...anchors can be thought of as words. Q. We're coming to understand the genomes of various organisms - not ju...on. The first method used to analyze a genome is comparing it with the genomes of other organisms, to see wh...3909 days ago
Translational Bioinformatics: Transforming 300 Billion Points of Data
...nts to find new uses for drugs, discovering new treatable mechanisms of disease in type 2 diabetes, and evaluating patients presenting with whole genomes sequenced. The NIH Wednesda...3903 days ago
- +7 more Video
Bio-Scripts
Download the genome from NCBI using bash script/command
...curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/fungi/assembly_summary...-r 's|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_geno...curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/assembly_summary...-r 's|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_geno...2524 days ago
Download the gff files from NCBI using bash script/command
...curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/fungi/assembly_summary...-r 's|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_geno...curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/assembly_summary...-r 's|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_geno...2515 days ago
- +8 more Bio-Scripts
Groups
...speed up the assembly procedure Comparative genomics approaches in genome assembly. Evolutionary Genomics Evolutions and their impact on genomes EvolveG EBAnalyser Bio...3935 days ago
This group is being designed to cover some of the common algorithms underlying the following fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein sequen...3894 days ago
Tags
- Evolutionary genomics of social insects. Extensive theoretical work has explained how and why complex societies evolve. However, only little is known about the genes and molecular mechanisms responsible for social phenotypes. We have been identifying genes and mechanisms involved in the evolution...
Tags: Ants, Genomes, Evolution, Queen Mary University, London
3551 days ago
Comments
Comment on "Short-read assembly using Spades !"
...be done using tools such as QUAST or BUSCO. These tools assess the completeness and accuracy of the assembled genome by comparing it to reference genomes or sets of conserved genes....407 days ago
- ...dwgsim is a short read simulator that can generate synthetic reads from whole genome sequencing data. It is designed to simulate reads from large genomes and can handle complex genome...
407 days ago
- +22 more Comments
