Results for "sequence analysis"
Users
Brief description: Currently, I'm pursuing a PhD at Bioinformatics Centre, University of Pune, Pune, India. I have developed an algorithm for alignment-free sequence analysis with its applications in molecular phylogeny, clustering and sero/genotyping .2920 days ago
- Skills: Next Generation Sequence Analysis
2716 days ago
- +3 more Users
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several perl modules and dependencies....ython support for the BioSQL database schemalibbtlib-perl - library for basic sequence...3944 days ago
Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to anal...abbit hole and possibly never getting a solution. Learn to perform root cause analysis, learn enough about the under...3944 days ago
- +57 more Blogs
Bookmarks
- I bet, this website will be your best friend in near future. This helps us to explore...from it. You can find some useful open source bioinformatics codes for your analysis work. You can use the left ba...
3910 days ago
Rdatamining.com : R and Data Mining
This website presents examples, documents and resources on data mining with R. Documen...for Data Mining, R and Data Mining: Examples and Case Studies and Time Series Analysis and Mining with R.3910 days ago
- +424 more Bookmarks
Files
- Bioinformatician life is interconnected, they always dream for a powerful server, little more space on server as they are generating lots of data per run, dream to publish results in good impact journals, meetings reminders :) and research analysis off course!!!
3904 days ago
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3862 days ago
- +11 more Files
Discussion topics
Does anyone have Nanopore latest updates?
There was a lot of buzz about Oxford Nanopore Technologies® is developing the...ised MinION™ device. These are a new generation of electronic molecular analysis system for use in scientific...3807 days ago
- The key to finding a solution is to notice that most genomicsequences differ by very little. It may...t the number of complete genome sequences being stored is increasing r...l. In other words, a single DNA sequence isn't particularly compressib...s/181-algorithms/4537-a-new-dna-sequence...
3914 days ago
- +2 more Discussion topics
Pages
Bio++ : C Language libraries for your biological need
...for Bioinformatics, including sequence analysis,phylogenetics, molecular evol...f the libraries are as follows:Sequence analysis Sequence and Site objects, w...u B. Non-homogeneous models of sequence evolution in the Bio++ suite...of C++ libraries for sequence analysis, phylogenetics, molecular evo...3942 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other Bioinformatics tools.BioRuby project provides an i...3941 days ago
- +14 more Pages
Top-level pages
- ...st growing HT-NGS technologies, the main challenge is to cope with the analysis of vast production of sequenc...iologically suitable language to handle ever growing genome or protein sequences. The next step after readin...
3942 days ago
- ...or example, DNA or amino acid sequences and three–dimensional...to provide raw data for later analysis. Once the raw data are availa...tein interactions. Analysing sequence data: The primary data of se...of protein domains. Combined analysis of structural and genomic dat...
3941 days ago
- +59 more Top-level pages
Wire posts
News
100K Foodborne Pathogen Genome Project
The 100K Genome Project, led by the University of California, Davis, the U.S. Food and Dr...ounced that it has added 20 newly completed genome sequences of foodborne disease-causing...hnology Information. 100K Genome Project, aims to sequence...3917 days ago
Prime Minister’s 100k Genome Project
Genomics Ebgland is destined to sequence 100,000 patients over the next five year in England. A landmark project by british government. Genomics England will play...3917 days ago
- +59 more News
Opportunity posts
Structural polymorphism analysis from NGS data
...analyze Next Generation Sequencing (NGS) data analysis. In the context of a flagship...will be critical to establish a link between sequence variation, functional variati...tational facilities and expertise in NGS data analysis, and will benefit as well fro...3943 days ago
- van Noort Group is looking for PhD fellows We currently access an unprecedented kno...a prerequisite for this position. Experience with high throughput sequencing analysis methods, machine learning, pr...
3943 days ago
- +202 more Opportunity posts
ResearchLabs posts
- Location :European Molecular Biology Laboratory (EMBL), Heidelberg, Germany. Our lo..., with an emphasis on mitosis. We develop in-vitro assays, quantitative image analysis and cytosim, a computer simul...
3943 days ago
- Melanie Bahlo is an applied statistician working in the areas of statistical genetics,...pedigrees Investigation of DNA sharing in distantly related individuals CNV analysis in pedigrees and connections...
3942 days ago
- +54 more ResearchLabs posts
Fun
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names will b...ga. Alignment to hona hi tha. Mera sequence mera base. Markov aapke hai...mil gaya. BLASTana FASTAna. Hamari Sequence aapke pass hai. BLAST To Hon...GeneScan Karke Dekho Alignment Apna Sequence...3913 days ago
Video
- http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.
3902 days ago
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive Data A...will soon outstrip advances in computing power to perform current methods of analysis. Extracting new science from...3896 days ago
- +20 more Video
Bio-Scripts
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org...1095 days ago
BioPerl to convert between sequence formats from Fasta to Genbank
#!/usr/local/bin/perl -w # Sequence formats to choose: Fasta, EMBL. GenBank, Swissprot, PIR and GCG use Bio::SeqIO; $inFile = "BRCA2.fa"; $in = Bio::SeqIO->...2910 days ago
- +95 more Bio-Scripts
Polls
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a progr...basically want to do de-novo assembly, map reads, align reads, and expression analysis. Recommendations welcomed. Wh...3525 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3521 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the...ed genome, transcriptome, proteome, and metabolome analysis to reveal the molecular profi...it provides lots of useful tools for comprehensive analysis and comparison of high-throug...2356 days ago
Groups
R is a free software programming language and a software en...iners for developing statistical software and data analysis. R's popularity has increased...ical packages. Bioconductor provides tools for the analysis and comprehension of high-thr...3945 days ago
Next Generation Sequencing (NGS)
This group meant to discuss different sequencing methods and their data analysis. Now, sequencing is almost one of t...3901 days ago
- +5 more Groups
Tags
Best book Titles for Learning Bionformatics
Nothing can add to our intellect more than reading a book. In books, we can experience new things that we would not normally be able to experience. It is proved that books can change our lives and other people’s lives. Reading can make us more intelligent, updated, imaginative. Withou...Tags: bioinformatics, computational biology, machine learning, statisitics, data mining, algorithms, sequence analysis, structure analysis, database, phylogeny, genes, strings, MSA
3912 days ago
Bioinformatics Infrastructure Facility
The Bioinformatics Infrastructure Facility has started working in the year 2007 at Presidency College, Kolkata. It is one of the premier institutes of India and boasts of a rich heritage and great alumni. The Infrastructure Facility has a dedicated team headed by Sayak Ganguli and ably supported ...Tags: Bioinformatics, sequence analysis, India
3879 days ago
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Comments
Comment on "Tools for Sequence translation !"
Sequence translation is the process of converting a DNA or RNA sequence into its corresponding protein sequence. This is an important step in the analysis of genomic and transcriptomic...the many tools available for sequence translation. The choice of to...415 days ago
Comment on "Tools for RNA classification"
...eful for identifying non-coding RNA (ncRNA) sequences. Rfam: Rfam is a databa...tor machine (SVM) algorithm to classify RNA sequences. It is particularly useful f...a combination of HMM-based and comparative sequence analysis approaches to predict tRNA ge...415 days ago
- +11 more Comments
