Results for "sets"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...ually refer to synteny as the conservation of blocks of order within two sets of chromosomes that are being...be an efficient and accurate automated tool for defining HSBs using datasets that may contain minor errors...2622 days ago
List of gene ontology software and tools
...identify enriched Gene Ontology (GO) terms in a list of microarray probe sets or gene identifiers (with exp...s extensive computational filters to allow the generation of specific subsets of GO annotations, mapped to...3722 days ago
- +7 more Blogs
Bookmarks
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
...odels for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets and found that its accuracy a...1158 days ago
- ...(Orange Canvas). The latter is also suitable for non-programmers. Orange Bioinformatics provides access to publicly available data, like GEO data sets, Biomart, GO, KEGG, Atlas, Ar...
3511 days ago
- +70 more Bookmarks
Pages
Genome Assembly Tools and Software - PART2 !!
...embly of DNA insertion variants in NGS read datasets with respect to a reference g...e-to-read alignment and comparison between read sets. It uses the FMD-index, a nov...rect Substitution Sequencing Errors in WGS Data Sets Quake is a package to c...2698 days ago
Top-level pages
- ...oftware to create, manage and interpret massive sets of complex biological data."...ssess relationships among members of large data sets; (2) the analysis and interpr...s in bioinformatics focus on three types of datasets: genome sequences, macromolec...
3959 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...individual based model intended to simulate datasets under a very broad range of c...imulator for the simulation of case control datasets at SNP markers https://mathge...aid in the interpretation of polymorphism data sets. http://home.uchicago.edu/~rh...3749 days ago
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Wire posts
News
- ...f. S. P. Gejji, Univ. Pune]5. ab initio methods; Classification of Basis Sets; Configuration Interaction; M&...ARIntroduction; Elementary Statistical Measures; Correlation between Two Sets of Data; Correlation between...
3841 days ago
- ...om Cold Spring Harbor Laboratory has released an algorithm, called Scalpel, for finding insertions and deletions in next generation sequencing data sets. Scalpel, which is open sourc...
3558 days ago
- +5 more News
Opportunity posts
- ...dge of the Biological Sciences, Biochemistry, and Microbiology. The individual should additionally have experience in handling high-throughput data sets as well as programming skills...
3793 days ago
Research Assistant @ University of Hyderabad
...should have experience in networking using R language and should be able to develop networks using the transcriptome, proteome and metabolite data sets. M.Tech. in Bioinformatics is...3826 days ago
- +20 more Opportunity posts
ResearchLabs posts
- ...it interesting mechanistic origins. We are also interested in the large-scale integration of genomic, expression, methylation and proteomic data sets, as well as the application o...
3279 days ago
- ...faculty members and their labs at Johns Hopkins working on computational, statistical, and mathematical methods that can turn massive genomic data sets into biologically and clinica...
2559 days ago
Video
Memories Can Be Passed Down Through DNA
....org/content/330/6004/611 "The cells in a multicellular organism have nominally identical DNA sequences (and therefore the same genetic instruction sets), yet maintain different term...3659 days ago
Big genomic data on Google Cloud Platform
...ata produced has risen into the petabytes. Google is working with the genomics community to define a standard API for working with big genomic data sets in the cloud. Building on Goo...3500 days ago
Bio-Scripts
- ...hecking for gawk... gawk checking whether make sets $(MAKE)... yes checking whet...hecking for gawk... gawk checking whether make sets $(MAKE)... yes checking whet...hecking for gawk... gawk checking whether make sets $(MAKE)... yes checking whet...
2163 days ago
Installing Porechop on Ubuntu !
...ter search settings: Control how the program determines which adapter sets are present --adapter_th...possible adapters to determine which adapter sets are present...2118 days ago
Polls
Which of the followings are the best place to study Bioinformatics ?
...d from genome projects, next generation sequencing and other 'omics' techniques. Bioinformatics provides the tools to analyse and exploit such data sets.Can you please suggest me the...3428 days ago
Tags
Many-to-many pairwise alignments of two sequence sets
needleall reads a set of input sequences and compares them all to one or more sequences, writing their optimal global sequence alignments to file. It uses the Needleman-Wunsch alignment algorithm to find the optimum alignment (including gaps) of two sequences along their entire length. The algori...Tags: Many-to-many, pairwise, alignments, sequence, sets, needleall, Needleman-Wunsch
2159 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
The algorithm presented herein, Mining Algorithm for GenetIc Controllers (MAGIC), uses ENCODE ChIP-seq data to look for statistical enrichment of TFs and cofactors in gene bodies and flanking regions in gene lists without an a priori binary classification of genes as...Tags: MAGIC, tool, predicting, transcription, factors, cofactors, driving, gene, sets, ENCODE, data
1268 days ago
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Comments
Comment on "Short-read assembly using Spades !"
...sing tools such as QUAST or BUSCO. These tools assess the completeness and accuracy of the assembled genome by comparing it to reference genomes or sets of conserved genes. Iter...427 days ago
Comment on "Sibelia: A comparative genomics tool"
...with "Sibelia" executable. Directory "examples/Sibelia" contains two sets of bacterial genomes. The eas...plification parameters. There are two another simplification parameters sets, called "fine" and "far". To...1297 days ago
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