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The Wire
#Tricks
Wire posts tagged with 'Tricks'
BioJoker
@biojoker
Thread
By
BioJoker
1854 days ago
Nano tricks
https:/
/
wiki.gentoo.org/
wiki/
Nano/
Basics_Guide
#Nano
#Tricks
Abhimanyu Singh
@abhimanyu
Thread
By
Abhimanyu Singh
2575 days ago
Show before(B) and after(A) the matching region $ grep -B 3 -A 2 foo README.txt
#Linux
#Tricks
#View
#Grep
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
2637 days ago
Remove all blank lines from file. perl -i.bak -n -e "print if /\S/" ../finalSample.fa
#Perl
#Tricks
#PerlOneliner
Jit
@jit.aber
Thread
By
Jit
2712 days ago
Accept file from STDIN in Perl my $infh = \*STDIN; my $outfh = \*STDOUT
#Perl
#Tricks
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
2736 days ago
Extract ten lines below matched string with grep: grep -A 10 "string" filename1 ; -B for above and -C for both
#grep
#Linux
#Tricks
#Lines
#Matches
Jit
@jit.aber
Thread
By
Jit
2796 days ago
Split the text file with line number in Linux: wc -l abc.txt and then: split -l 60000 abc.txt
#Split
#Break
#Line
#Ubuntu
#Linux
#Tricks
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
2812 days ago
Little correction, I guess you mean concatenate many files: $ for a in *.txt ; do cat $a >> newFile ; done
#Linux
#Tricks
Neelam Jha
@neelam
Thread
By
Neelam Jha
2813 days ago
Contact many files: $ for a in *.txt ; do cat $a >> newFile ; done
#Linux
#Tricks
Jit
@jit.aber
Thread
By
Jit
2814 days ago
Find a file with certain size and delete them: $ find . -name "see-D-d-ALN_*" -size -10k -delete
#Delete
#Size
#Linux
#Tricks
Jit
@jit.aber
Thread
By
Jit
2828 days ago
du -sh * will give you the size of all the directories,files etc in current directory in human readable format.
#Linux
#Size
#Tricks
#Folders
#Files
Jit
@jit.aber
Thread
By
Jit
2881 days ago
Extract reference nucleotide from BAM file: samtools view your.bam | awk '{print substr( $10, 100, 1)}'
#SAM
#BAM
#Samtools
#Tricks
#NGS
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
3244 days ago
Perl Elements to Avoid
http:/
/
perl-begin.org/
tutorials/
bad-elements/
#Perl
#Tricks
#Avoid
#Learn
#Beginners
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
3244 days ago
Fancy One-Liner
http:/
/
userweb.eng.gla.ac.uk/
umer.ijaz/
bioinformatics/
oneliners.html
#Perl
#OneLiner
#Bioinformatics
#Quick
#Common
#Tricks
#CommandLine
#Terminal
Jitendra Narayan
@admin
Thread
By
Jitendra Narayan
3385 days ago
Get line number with Perl $fh->input_line_number()
#Perl
#Tipsoftheday
#Tricks
John Parker
@parker
Thread
By
John Parker
3642 days ago
Bacterial genome assembly tips using Valvet
http:/
/
pathogenomics.bham.ac.uk/
blog/
2009/
09/
tips-for-de-novo-bacterial-genome-assembly/
#Assembly
#NGS
#Bacteria
#Genome
#Tricks
#Tips
#Velvet
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