Results for "Ensembl"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...another or duplicated due to micro-rearrangements. SyntenyView ( http://www.cbs.dtu.dk/dtucourse/cookbooks/nikob/exercises/gf1_output_5.html), Ensembl 'SyntenyView' shows conservat...2601 days ago
Important Journals, Blogs and Forums for Bioinformaticians
...Biology PLOS Genetics Blogs. Some of these blogs are very relevant to bioinfo jobs. Others are more personal interest. The OpenHelix Blog Ensembl blog Galaxy News Blue Colla...2633 days ago
Bookmarks
- ...ation pipeline developed at the Victorian Life Sciences Computation Initiative (VLSCI), University of Melbourne. It is based around BWA, GATK and ENSEMBL and was originally designed f...
3643 days ago
Ensembl comparative genomics resources
The Ensembl comparative genomics resources are o...le analysis of chordate genome data. Ensembl computes pairwise and multipl.... Gene alignments are used to define Ensembl Protein Families, GeneTrees a...r and different alignment views. The Ensembl comparative genomics infrastr...2979 days ago
- +8 more Bookmarks
Pages
Awesome perl frameworks, libraries and software - PART 2
...e convention-based coding style. Farow/hexchat-scripts - Perl scripts for HexChat exercism/xperl5 - Exercism Exercises in Perl 5 Ensembl/ensembl-variation - The Ensembl...2485 days ago
Awesome perl frameworks, libraries and software - PART 3
...e - REST::Google provides OO access to Google REST API from Perl Ensembl/Bio-DB-HTS - Git repo fo...sp;- Yet another tool to manage perl installs in your home directory. Ensembl/ensembl-funcgen - Ensemb...2485 days ago
- +1 more Pages
Top-level pages
- ...f genomes belong to various eukaryotes, prokaryotes, etc. Following are the weblink for different available browsers: http://www.ensembl.org/index.html http://ensemblgenomes.org/ http://genome.uc...
3905 days ago
Next generation sequencing in R or bioconductor environment
...tting data and annotation information along genomic coordinates HilbertVis: Hilbert genome plots GenomeGraphs: Plotting genomic information from Ensembl TileQC: Flow Cell Quality Vi...3615 days ago
- +4 more Top-level pages
Wire posts
News
- ...;human and mouse Imported APPRIS flag for human and mouse Updated Amazon molly gene set Find more at http://www.ensembl.info/blog/2014/10/02/ensembl-77-has-been-released/
3490 days ago
- ...ene models in Bacteria New assembly of tomato (version 2.50) Full support for UCSC Track Hub format for hosting your own data in Ensembl More at http://www.ensembl.info/blog/2015/06/16/ensembl-...
3236 days ago
- +2 more News
Video
Demo 4: Using BLAST/BLAT in Ensembl
We demonstrate the BLAST/BLAT tool in Ensembl. Search for a sequence in Ensembl, and identify hits to the genome, or to genes, with this tool.3880 days ago
Comparative Genomics in Ensembl
The Ensembl browser provides viewable whole-genome alignments, homologues and phylogenetic gene trees, protein families, and ancestral sequences. Learn how to view and export these data in this video.3382 days ago
Bio-Scripts
- .../Configure -des -Dprefix=$PERL_BASE/perl-5.24.1 -Dotherlibdirs=$PERL_BASE/perl-5.24.1/lib/perl5 make make install # Install dependencies for Ensembl API, VEP, OncoKB, and other t...
2135 days ago
Tags
Demo 4: Using BLAST/BLAT in Ensembl
We demonstrate the BLAST/BLAT tool in Ensembl. Search for a sequence in Ensembl, and identify hits to the genome, or to genes, with this tool.Tags: BLAST, BLAT, EnsEMBL
3880 days ago
Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such reference set that facilitates comprehensive and reproducible analysis of chordate genome data. Ensembl computes pairwise and multiple whole-genome alignments from which large-scale synteny, per-base conservation scores and constrained ele...Tags: Bioinformatics, Computational Biology, Genome, RAD-Seq, NGS, Comparative Genomics, Resources, EnsEMBL
2979 days ago
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Comments
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...biological interest. Obtain the genome sequences: Download the genome sequences of the selected species from a public database, such as NCBI or Ensembl. Gene annotation: Annotate t...414 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
...rimary_Assembly/assembled_chromosomes/FASTA/http://hgdownload.cse.ucsc.edu/goldenPath/hg19/chromosomes/Reference annotation downloadhttp://useast.ensembl.org/info/data/ftp/index.html3611 days ago
- +1 more Comments
