List of gene ontology software and tools
The Gene Ontology (GO) is a set of associations from biological phrases to specific genes that are either chosen by...results, and many other features. Multiple testing corrections are applied to extrac...3701 days ago
Computer simulation of genetic mechanism !!
Computer simulation is the discipline of designing a model...at simulates sequence-like data over large genomic regions in large diploid populations...AMPLE An association simulator for candidate regions or genome scans http://www.h...2966 days ago
Download mutliple fasta file from NCBI in one GO!!
if you have less time, then use three ways mentioned in bookmark link to extract/download all fasta sequences in single click given that you already have a list of GIs or accession IDs . A...3901 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the...ty at at a given gene or locus, and then processes each graph independently to extrac...2957 days ago
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Awesome perl frameworks, libraries and software - PART 2
licheng/gccfilter - gccfilter is a perl filter to colorize and simplify (or expand) gcc diagnostic messages....y files mj41/auto-unrar - Smart Perl scripts (for Linux) to auto unrar / extrac...2486 days ago
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Bioinformatics Courses Around the World
Bioinformatics Courses around the world Here is the list...on gene finding, a course on analysis of promoter region,... master: bioinformati...Institute introduction to bioinformatics Regional training course on bioinfor...3935 days ago
Conserved Domain Database (CDD) version 3.11 released
National Center for Biotechnology Information (NCBI) Conse...lishes the need to mask out compositionally biased regions in query sequences; Dom...results. “Standard” results will provide, for each region on the query sequence, the be...3719 days ago
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PostDocs positions in computer science in HELSINKI, FINLAND
Several university departments in the Helsinki region, Finland, are looking for postdoctoral researchers in the field of...ting, Human-centric ubiquitous ICT, Bioinformatics, etc. Helsinki region is a safe, pleasant and attra...3885 days ago
Internships @ Indian Institute of Science
Internships available for Bachelors and Masters students Each node will host studen...career in mathematical or computational biology at institutions located in its region. Eligibility: Bachelors (3...3737 days ago
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Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequence...eqs)) from Bio import Entrez allseq = {} for x in seqs: if 'gene-region' in x and x['gene-region'] == "complete": nm = x[...1128 days ago
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.plTags: Centromere, AI, Perl, Pattern, Regular Expression, Extract Region
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Comment on "Running Trinity on RNA-seq !"
...expression analysis. Trinity provides direct support for several DE analysis methods, including edgeR, DESeq2, Limma/Voom, and ROTS. Extract coding regions using TransDecoder ...2114 days ago